Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0551 ATGGCCTCTATCTATTCCCTCAAAACAGAAGTCCCTTACAGAATTACACCATTCTTGATCATCCTCATTGTCCTTCTTATCTCCATCAACCCCTCACACCAAACTAAAAACCACTCTTCCCCACTCACCCAACTAAACCCAAGGCTCTCAAAAGCTTACATAGCTCTCCAAGCATGGAAGCACTTCATCACCTCTGACCCAAAAAACTTCACCTCCAACTGGCATGGCCCCTATGTCTGCAACTACACTGGAATCTTCTGTGCACCAGCACCAGACAACCCTCACATCTACACCGTCGCCGGAATAGACCTCAACCACGCCGGAATCGCCGGTTCATTAACGGAAGAACTAGGCCTCTTAACTGACTTAGCTCTCTTACACATAAACTCAAACTCCTTCTATGGCTCCCTCCCTCACACCTTCTCCAACCTCCACCTCCTCTTCGAACTCGACATCAGCAACAACAAATTCGCAGGAAAATTCCCAGCAACTCTCCTCTGCCTCCCTTCACTGAAATTCCTCGACATCAGATTCAACAGCTTCCATGGTAACATCCCTTCACGACTCTTCGATCTCAAACTCGATGCTCTGTTCATCAACAACAACAAATTCCAATTCTCGTTACCGGAGAATTTTGCCAACACACCTGCTTCTGTTCTTGTGTTCGCGAACAATGACATCAAGGGTTGTTTGCCGGCGAACTTGGGGAAGATGAAGGGTACGTTGAACGAGATTATCATCACGAACGGTGGTTTAACCGGTTGTTTGCCGGAGGAGATTGGGGAGCTGGTGAATGTGACGGTGTTTGATGTGAGTTTCAATAGGTTGGTTGGGGAGTTGCCGGAGAGTGTTGGAGAGATGAAGGGGTTGGAGCAGTTGAATGTGGCGGGGAATAAATTTTCCGGTGAGGTTCCGGCGAGTGTGTGTGGGTTGCCGCGGTTGGAGAATTTTACGTATTCGTTTAACTACTTTTGCAGTGAATCGGAAGCGTGTTTGAAGCTGCGTGAGAAGGATGATCGGAAGAATTGTATTCCGTTTAGGCCGTTGCAGAGGTCGGAGATGGAGTGTAAAGCTTTTTATGCACATCCTGTTGATTGTAGTGCCTTTGGTTGTTCCGTTACAACTGCATCGCCACCACCACCACCGCCTCCGCCCCCTCCACCGCCGCCTCCCCCTCCGCCTCCTCCTCCACCACCGCCTCCTCCCCCAGCTTACTATGGTCACTATCTATAA 1233 0.4931 MASIYSLKTEVPYRITPFLIILIVLLISINPSHQTKNHSSPLTQLNPRLSKAYIALQAWKHFITSDPKNFTSNWHGPYVCNYTGIFCAPAPDNPHIYTVAGIDLNHAGIAGSLTEELGLLTDLALLHINSNSFYGSLPHTFSNLHLLFELDISNNKFAGKFPATLLCLPSLKFLDIRFNSFHGNIPSRLFDLKLDALFINNNKFQFSLPENFANTPASVLVFANNDIKGCLPANLGKMKGTLNEIIITNGGLTGCLPEEIGELVNVTVFDVSFNRLVGELPESVGEMKGLEQLNVAGNKFSGEVPASVCGLPRLENFTYSFNYFCSESEACLKLREKDDRKNCIPFRPLQRSEMECKAFYAHPVDCSAFGCSVTTASPPPPPPPPPPPPPPPPPPPPPPPPPPAYYGHYL* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0551 410 Pfam Leucine rich repeat 123 180 IPR001611 GO:0005515
Lja5g0551 410 MobiDBLite consensus disorder prediction 375 410 - -
Lja5g0551 410 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 24 384 - -
Lja5g0551 410 Pfam Leucine rich repeat N-terminal domain 55 87 IPR013210 -
Lja5g0551 410 SUPERFAMILY L domain-like 52 329 - -
Lja5g0551 410 Gene3D Ribonuclease Inhibitor 51 217 IPR032675 -
Lja5g0551 410 Gene3D Ribonuclease Inhibitor 218 344 IPR032675 -
Lja5g0551 410 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 24 384 - -
Lja5g0551 410 MobiDBLite consensus disorder prediction 374 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0551 Lja-Chr5 4857024 4858547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0551 46 371 Leucine-rich Repeat extension Gene Families AT3G22800 67.890 2.41e-160 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0551 - - gmx:100818195 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0551 5 4857024 4858547 Lja5g0551 5 4857024 4858547 ECH