Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0550 ATGGCCGTCGGCAAGAACAAGCGTATCTCCAAGGGGAAGAAGGGAAGCAAGAAGAAAGCTTCTGATCCCTTTGCCAAGAAGGATTGGTATGATATCAAGGCTCCTTCTGTGTTCCAGGTCAAAAATGTTGGCAAAACCCTCGTCTCTCGTACTCAGGGTACCAAGATTGCTTCAGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCCGATCTTCAGGGCGATGAGGAACAAGCTTTCAGGAAGATCAGACTGAGAGCTGAAGATGTTCAAGGAAAGAATGTTCTGACCAATTTCTGGGGAATGAACTTCACTACTGACAAGCTGAGGTCACTGGTGCGAAAGTGGCAAACTCTGATTGAAGCCCATGTGGATGTGAAGACTACTGATAACTACACATTGAGGATGTTCTGCATTGGATTTACCAAGAGAAGAGCTAACCAGGTGAAGAGAACCTGTTATGCACAATCCAGCCAGATTAGACAGATACGCAGGAAGATGAGGGAAATCATGACCAACCAGGCAACATCTTGTGATTTGAAGGAGTTGGTCCGCAAGTTCATTCCTGAGGTGATTGGGAAAGAGGTTGAGAAGGCAACAACTGGCATTTACCCTCTGCAGAATGTGTTTGTTCGTAAAGTCAAGATCCTGAAAGCTCCTAAGTTCGATCTTGGAAAATTGATGGAGGTTCACGGGGATTACTCAGAAGATGTTGGTACTAAGGTAGACAGACCTGCTGATGAAACCGTGGCTGAGGAACCCACTGAAATTGTTGGAGCTTGA 786 0.4567 MAVGKNKRISKGKKGSKKKASDPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEEQAFRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMREIMTNQATSCDLKELVRKFIPEVIGKEVEKATTGIYPLQNVFVRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVDRPADETVAEEPTEIVGA* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0550 261 Pfam Ribosomal S3Ae family 16 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Lja5g0550 261 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 261 - -
Lja5g0550 261 MobiDBLite consensus disorder prediction 1 15 - -
Lja5g0550 261 Hamap 40S ribosomal protein S1 [RPS3A]. 1 258 IPR027500 GO:0003735|GO:0005840|GO:0006412
Lja5g0550 261 MobiDBLite consensus disorder prediction 240 261 - -
Lja5g0550 261 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 261 - -
Lja5g0550 261 SMART Ribosomal_S3Ae_2 15 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Lja5g0550 261 MobiDBLite consensus disorder prediction 1 23 - -
Lja5g0550 261 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0550 1 261 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 85.878 1.12e-165 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0550 K02984 - gmx:100818730 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0550 5 4847687 4850242 Lja5g0550 5 4847687 4850242 ECH