Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0548 ATGGACGACCAAACTCCCGAGAGGAACAACACTCCTCTTTCCACCGAGGGCTCACCTGTTTTCAACTTCATCAATAGTCTATCTCCTCTAAAGCCTGTAAAGCCTGCATATGCCACACAGACATTCAGCTCGCTTAGCTTTCCATCCCCTCCATCAGTTTTCACATCCCCCCATGCCAGCTGTCACAAGGAATCCAGATTCCTCAGGAGGCATAACCTTTTGGACACATCAACACCTAAAGTTTTGTCTGAAGATGTCAATAAAATATATTCATGTGAAGAGGCTCCTAAACATTCTACTCATGCATGTCATGACTCAAATGAGCAACAGGAAAACACTGATCAACGAATTTCCGTAGGAGATTCCTCAATTGAGCCATCTAGTGAATACACAAGGTTCTCATCCGAGCTTCCTGGAGCCTTAAAATATAATTCTGGTGGCCATGGATATAGTCCTCTACTCTGCGATAACATGGCTAACACTTGTTTCGAATTGCCTGGCAAGCCAGCAACATATGCTGCCTGTGTTCAGGAAGGCCCTAAAAAAGATTCAGCTGTGGGTAACATGCATCTTCAGAGAGTATGCCATATCGGGGGAAGGGAAAATTTAATTACTGATGCTTCCAATCGGTTAATTTTAGGCTCTCCAAATGTGACAGAAGCTTTTAGGGGCCTCATGAATCAACAATTGGATCCTTCAATAGACCTTAGCAATTATTTTACTTATAAATATGGTAGAATGCAACCTGTTAATCTAGCTGCTTCGGGTTCAGAACATGGAATTCAGTATCATCCAAATGGACCAATTACAGGTCAGACACAGAATAATCTTCCCAGTGTTGCTTTGATGACTAGCAATCCAAGTGAGAAAATGAATGATGAGCTTCTTCAAGCGACCTACCGTGGTATGAGGCGTAGTCTAGACTATGAGATGGCCAGTGTGCAAAGGAAGAACTCTGGTGGTAGTTCACACATTAGTTCCAGTACAGCAAAGTCTGATGAGAGGGGTATTGAAAATCCGCTGCTTCCTACAAAACACACTTGTGATTCACACTTGAATCCACTTGCAACTTTAAAAGATTACAAAAGTTCAAAAGGTGAACCGATGTCTTCTCAAATGCAACCTAATTTGCCCAGCTCCACTTCTTCCATGCTTCTCTCTTCAAGACAAGAGGGTCCTCAATCGATGGAAAATGATTTGGAGCCATCTGAGGGTGAAGTGCAGCCTGCTGAAGATTATACCCAGTCACCAGGTTACATGGCTGATGAAGATTTCCATCCGAATGTCCCCAAAAAGAAAAGGAAAGTTCAGCGCAAGTTGGAACTTTCTGGTGGAGGGGAGTCGTCTTGCAAGCGGTGTAATTGTAAGAAATCAAAGTGTTTGAAGCTTTATTGTGAGTGTTTTGCTTCTGGAGTATACTGCACAGAACCTTGCATGTGCAGGAACTGCCTCAACCAACCTATTCATGCAGAAACTGTTCTTCAAGCTCGCAAGCAGATTGAGTCTCGCAATCCACTTGCGTTTGCTCCTAAAGTCATAAGAAGTTCTGTTTCCACACCTGAAACCAGGGATGATCCTAACAAAACTCCAGCTTCAGCACGACATAAAAGAGGATGTAATTGCAAGAAATCAAGCTGCCTAAAAAAATACTGTGAATGCTATCAGGGTGGTGTTGGTTGCTCTATAAGCTGTAGATGTGAAGCGTGCAAAAATGCCTATGGTAGAAAAGATGGTTCTGGTCCTTCTGAAATAGAAGCTGAGCCTGAAGAAGAAACAAAAGCGCGTGAAAAGAGTGAGGTAGGAAAAGCCTCCCAGAAAACCAATATTCAGAATACTGAAGACCAGTCGGAGTGTGCTCTTCCCACAACACCATCCAGGCGGTTACTTCCTTTACCCTTTTCATCGGATGGAAACCCATCAAGATCTTTTATTGCTACAATCTCTGCTTCTGGATTGATTGCCAGCCAGAAACTTGGGGAATCAAATGCTCTGCAGTCTCAAGTTACGTTGGAAAAGCCTTTTCAAACTGTTCCAGATGATGATGACTCTTCAGGCCATTGCATCAAAATTTCTTCTCCTAAGGGCAAGAGGATCTCATCTCCTAGATGTGAAAATGGATCTCCTCATACTCGGAGAGGTGGCAGGAAGTTAATATTACAATCCATCCCTTCATTTCCTTCTCTCGCCCCTCCCCATTAG 2199 0.4329 MDDQTPERNNTPLSTEGSPVFNFINSLSPLKPVKPAYATQTFSSLSFPSPPSVFTSPHASCHKESRFLRRHNLLDTSTPKVLSEDVNKIYSCEEAPKHSTHACHDSNEQQENTDQRISVGDSSIEPSSEYTRFSSELPGALKYNSGGHGYSPLLCDNMANTCFELPGKPATYAACVQEGPKKDSAVGNMHLQRVCHIGGRENLITDASNRLILGSPNVTEAFRGLMNQQLDPSIDLSNYFTYKYGRMQPVNLAASGSEHGIQYHPNGPITGQTQNNLPSVALMTSNPSEKMNDELLQATYRGMRRSLDYEMASVQRKNSGGSSHISSSTAKSDERGIENPLLPTKHTCDSHLNPLATLKDYKSSKGEPMSSQMQPNLPSSTSSMLLSSRQEGPQSMENDLEPSEGEVQPAEDYTQSPGYMADEDFHPNVPKKKRKVQRKLELSGGGESSCKRCNCKKSKCLKLYCECFASGVYCTEPCMCRNCLNQPIHAETVLQARKQIESRNPLAFAPKVIRSSVSTPETRDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEACKNAYGRKDGSGPSEIEAEPEEETKAREKSEVGKASQKTNIQNTEDQSECALPTTPSRRLLPLPFSSDGNPSRSFIATISASGLIASQKLGESNALQSQVTLEKPFQTVPDDDDSSGHCIKISSPKGKRISSPRCENGSPHTRRGGRKLILQSIPSFPSLAPPH* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0548 732 MobiDBLite consensus disorder prediction 313 334 - -
Lja5g0548 732 MobiDBLite consensus disorder prediction 112 131 - -
Lja5g0548 732 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 537 572 IPR005172 -
Lja5g0548 732 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 451 486 IPR005172 -
Lja5g0548 732 MobiDBLite consensus disorder prediction 511 538 - -
Lja5g0548 732 SMART CXC_2 534 575 IPR033467 -
Lja5g0548 732 SMART CXC_2 448 489 IPR033467 -
Lja5g0548 732 MobiDBLite consensus disorder prediction 98 131 - -
Lja5g0548 732 MobiDBLite consensus disorder prediction 574 635 - -
Lja5g0548 732 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 5 730 IPR044522 GO:0003700
Lja5g0548 732 MobiDBLite consensus disorder prediction 364 397 - -
Lja5g0548 732 ProSiteProfiles CRC domain profile. 449 574 IPR005172 -
Lja5g0548 732 MobiDBLite consensus disorder prediction 313 446 - -
Lja5g0548 732 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 5 730 - -
Lja5g0548 732 MobiDBLite consensus disorder prediction 674 732 - -
Lja5g0548 732 MobiDBLite consensus disorder prediction 580 602 - -
Lja5g0548 732 MobiDBLite consensus disorder prediction 603 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0548 Lja-Chr5 4829061 4834158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0548 16 732 CPP Transcription Factor Family AT4G14770 40.403 4.16e-125 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Lja5g0548 TCR 6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0548 - - lja:Lj5g3v2045560.1 910.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0548 5 4829061 4834158 Lja5g0548 5 4829061 4834158 ECH