Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0547 ATGCTCAAGGATCTTACCACCAAACCAACATATTTGAAATTCCAAATGCATTCTTCGAAAAGCGAGGATTTCAGTGCCCTAAAGGTGGGATCTGAAGGTGGAGCATTGGATTTAAAGCTGAAGAAGAGTAGTGGAAATCTAAGCACTAATGATATGCTTAGAGCTGATAAAATTGATATGAAGAGTTTAGATGCCGCGCTAGAAAGGCACTTGAGCAGGGTTTTCTCCCGAGTCACCGAGGCGAAAAGGCCTAAAGAAGAATGGGAGATTGATCTGAGCAAATTGGAGTTACGACATGTGGTTGCTAGAGGGGCCTATGGCACTGTTTACAGGGGCACATATGACAACCAAGATGTTGCTGTGAAAGTATTGGACTGGGGTGAGGAGGGTGTTACAACTGCTGCTGAAATTGCTGGTTTACGAGCATCATTTCGGCAGGAGGTTGGGGTTTGGCAAAAACTTGATCATCCAAATGTCACAAAATTTATTGGAGCTTCAATGGGTACTTCAGATCTTCAGATTCCTATAGATGCTGGTGGTCAAGATTCCCTTCCTTCCAAGGCATGTTGCGTCATTGTTGAGTTTCTCCCTGGTGGGACTTTGAGACAATTCTTGTTTAAAAATAGGCGAAAGAAACTTGCATACAAGGTTGTGATTCAACTTGCTTTGAATCTCGCTCGAGGTCTTAGTTATCTACATTCAAAGAAAATTGTTCATCGCGATGTGAAAAGTGACAATATGTTGTTTGATGCTAATGAAAATTTGAAAATAACCGATTTTGGAGTTGCTCGGATTGAAGCTGCAAATCCGTGTGAAATGACGGGCGAAACTGGAACCATTGGGTATATGGCGCCGGAGGTTCTAAATGGTAAGCCTTATGACAGAAGGTGTGATGTCTACAGCTTTGGCATGTGCTTGTGGGAAATCTATTGTTGTGACTTGCCTTATCCAAATTTAAGTCTTGTTGAACTTTCAGCTGCGGTCGCTAATAAGAATTTGCGACCAGATATTCCTAGATGTTGTCCCAGCGCCTTGGCAAGTGTTATGCGGAAGTGTTGGGATCCAAAACCAAGTAAGCGAACAGAAATGCATGAAGTGGTGAGAATGTTAGAAGCAATTGATACAAGCAAAGGAGGTGGAATGATACCTGATGATCATGTTCAATTTTGTTTTTGTCTTGCACCTGTTCGCGGTCCTTAA 1200 0.4242 MLKDLTTKPTYLKFQMHSSKSEDFSALKVGSEGGALDLKLKKSSGNLSTNDMLRADKIDMKSLDAALERHLSRVFSRVTEAKRPKEEWEIDLSKLELRHVVARGAYGTVYRGTYDNQDVAVKVLDWGEEGVTTAAEIAGLRASFRQEVGVWQKLDHPNVTKFIGASMGTSDLQIPIDAGGQDSLPSKACCVIVEFLPGGTLRQFLFKNRRKKLAYKVVIQLALNLARGLSYLHSKKIVHRDVKSDNMLFDANENLKITDFGVARIEAANPCEMTGETGTIGYMAPEVLNGKPYDRRCDVYSFGMCLWEIYCCDLPYPNLSLVELSAAVANKNLRPDIPRCCPSALASVMRKCWDPKPSKRTEMHEVVRMLEAIDTSKGGGMIPDDHVQFCFCLAPVRGP* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0547 399 PRINTS Tyrosine kinase catalytic domain signature 231 249 IPR001245 GO:0004672|GO:0006468
Lja5g0547 399 PRINTS Tyrosine kinase catalytic domain signature 297 319 IPR001245 GO:0004672|GO:0006468
Lja5g0547 399 PRINTS Tyrosine kinase catalytic domain signature 341 363 IPR001245 GO:0004672|GO:0006468
Lja5g0547 399 PRINTS Tyrosine kinase catalytic domain signature 193 206 IPR001245 GO:0004672|GO:0006468
Lja5g0547 399 Gene3D Phosphorylase Kinase; domain 1 84 177 - -
Lja5g0547 399 SUPERFAMILY Protein kinase-like (PK-like) 78 370 IPR011009 -
Lja5g0547 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Lja5g0547 399 ProSiteProfiles Protein kinase domain profile. 95 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0547 399 Gene3D Transferase(Phosphotransferase) domain 1 198 380 - -
Lja5g0547 399 Pfam Protein tyrosine and serine/threonine kinase 95 370 IPR001245 GO:0004672|GO:0006468
Lja5g0547 399 SMART serkin_6 95 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0547 399 PANTHER KINASE-LIKE PROTEIN 21 389 - -
Lja5g0547 399 CDD STKc_MAP3K-like 101 370 - -
Lja5g0547 399 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 21 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0547 Lja-Chr5 4813743 4817720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0547 37 399 MAP Kinase Kinase Kinase AT3G22750 68.219 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lja5g0547 PK_Tyr_Ser-Thr 6.7e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0547 - K01968 gmx:100803917 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0547 5 4813743 4817720 Lja5g0547 5 4813743 4817720 ECH