Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0544 ATGTTCTCTTCCACCTCATATCATGACTCCATTAACCCTTTCCCTTCTTCTTTCCCTTCATCCTCTTACCCTTCTCTTCCTTTTCTCATTGATCCTGAAAATATCAATAATTTTCCTCAGGATCCACTTGTTTCTCATCCCTTCATACATGATAGTAACATCAATGATGCTCCAATATTCACACATGACACAACCAATTTGGCAGTTTCAGTTTCACACTTGCTTGAACAACAGGATCCACTTGGTGGTAATAACTATGCTAGTAGCATTGTTCCTAATTTCCTCAGAGCTTCAAAACCTGCAGCTTCTGCTTCTGCAGCTGCAGCCATGGCTACCACAAAGAAAGACAGGCACAGCAAGATTCACACATCTCAGGGGTTAAGGGACCGCCGGGTGAGGCTATCGAGCGAGATAGCGCGAAAGTTCTTCGATCTTCAGGACATGCTGGAGTTTGACAAGCCAAGCAACACACTTGAGTGGCTCTTCACAAAGTCTGAGAGTGCAATCCAAGAGCTTGCAAGGAGTAAGAACTGTTCCTGCAGCAGTAACAGTAACAACAACCCTTCAAATAACAACAAATCATTATTTGGTGGTGGTGATAATCATAATGGAACTAATTCCATCAGAGGGAGGGGCAACAGCAAGTTGAAGTGGACTACACAGAGGGATCAAGATGTTTGTGTTCTTCAGAATAAGAAGGAGTCAAGGGAGAGAGCAAGAGCAAGAGCTAGAGAAAGAACCTGTTACAAGATGTTGGAAGATCAAAGATGCCCTGCAAATACTACTCAAATAATGCATCAATTGAGGTCATCATCACCTATTCAGCTTCTTCAACCCTATCCTCACCTAATGGATAATAGTGAAGCAGTATCTGGTGGTGGTGGTGGAGATGGGTTTAATGTGATTGAGGAATCTATCATGATAAAAAGGAACATGATGTCTTCTAATTCTCATCCCCACGAAAACCATCACCTTGCAATCCCTAATAAGGAAGCAGGTTTCAACAACAACTATATTGACTACCCTCTATTGCAGCCCTATTCCACTACCCCAAATTGGGAAATAGCCACCATGAACATGAATCTCTCTACATGTTTCATGAACCAGTGGTAA 1113 0.4241 MFSSTSYHDSINPFPSSFPSSSYPSLPFLIDPENINNFPQDPLVSHPFIHDSNINDAPIFTHDTTNLAVSVSHLLEQQDPLGGNNYASSIVPNFLRASKPAASASAAAAMATTKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQELARSKNCSCSSNSNNNPSNNNKSLFGGGDNHNGTNSIRGRGNSKLKWTTQRDQDVCVLQNKKESRERARARARERTCYKMLEDQRCPANTTQIMHQLRSSSPIQLLQPYPHLMDNSEAVSGGGGGDGFNVIEESIMIKRNMMSSNSHPHENHHLAIPNKEAGFNNNYIDYPLLQPYSTTPNWEIATMNMNLSTCFMNQW* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0544 370 Pfam TCP family transcription factor 112 251 IPR017887 -
Lja5g0544 370 ProSiteProfiles TCP domain profile. 114 172 IPR017887 -
Lja5g0544 370 ProSiteProfiles R domain profile. 233 250 IPR017888 -
Lja5g0544 370 PANTHER TRANSCRIPTION FACTOR TCP12 89 355 - -
Lja5g0544 370 MobiDBLite consensus disorder prediction 177 216 - -
Lja5g0544 370 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 89 355 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0544 Lja-Chr5 4777342 4778454 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0544 112 254 TCP Transcription Factor Family AT1G67260 40.719 1.73e-25 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja5g0544 TCP 4.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0544 - - lja:Lj5g3v2045620.1 423.32