Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0530 ATGCCCAGCATGTTCTCTAAACACCTTCACCTTTGTTTCTTCAAGATCAAATACCCCACCTTTCTATCCCAACCTGATCCACACCACCACCACCACCACACCCCATCACCTCCTTCCACTCTCAACTCCACCACCTTCCACTTCAACTCAACCTTCACCCACCACAGCCACTCCCTCTACGACTCCACCACAGACAACTACTTCACCTCCTCTTCCTCCTCCTCCTCTGACTCCATGGACCTGCCTCCGCCGGACTTCGCCTCCATCTACGCCTCCCAGCGCTTCTTCTTCTCCTCTCCTGGAAGCTCCAATTCCATCACAGAATCCACCCCTGACTCTCGCCCCTGCAACACGTTGATACGAAGAGACGTTGTGAGTGTGCAAAAGTACTCTGTCAACCCCTTCGTTGATTTCCTCTGTTCAATGCAGGAAATGATCGATTCCCACAAAGTGTTGGACGTGAACAGTGACTGGGATTATCTCCACCAGCTCCTCTTATGCTACCTTGCTCTCAATCCTCCACATACTCACAAACACATTGTTCGTGCCTTCACCCATCTTGTTGTGGATCTTTTGTCATCATCATCATCTTCATCTTCATCATCAAACACCCCTTGCCGGATGCACAACCACAACCACCAACGGCAGGGTTGTTTCTCAGGGAGATTGGTGTAA 675 0.5052 MPSMFSKHLHLCFFKIKYPTFLSQPDPHHHHHHTPSPPSTLNSTTFHFNSTFTHHSHSLYDSTTDNYFTSSSSSSSDSMDLPPPDFASIYASQRFFFSSPGSSNSITESTPDSRPCNTLIRRDVVSVQKYSVNPFVDFLCSMQEMIDSHKVLDVNSDWDYLHQLLLCYLALNPPHTHKHIVRAFTHLVVDLLSSSSSSSSSSNTPCRMHNHNHQRQGCFSGRLV* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0530 224 Coils Coil 223 224 - -
Lja5g0530 224 ProSiteProfiles OVATE domain profile. 127 190 IPR006458 -
Lja5g0530 224 PANTHER TRANSCRIPTION REPRESSOR OFP12 1 202 - -
Lja5g0530 224 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 125 192 IPR006458 -
Lja5g0530 224 Pfam Transcriptional repressor, ovate 131 191 IPR006458 -
Lja5g0530 224 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 1 202 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0530 Lja-Chr5 4617491 4618165 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lja5g0530 Ovate 6.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0530 - - lja:Lj1g3v0095190.1 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0530 5 4617491 4618165 Lja5g0530 5 4617491 4618165 ECH