Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0524 ATGGAACCGGGAACGAGAGTTCCTGGCCCTTCTGGGGTTGTAGTCAAGAATAGGGGCTCTTCAGGGTGTTTGATTGTTAGAAAGAATGGGGATGGTGGTTTGGGTGGTGGTGTTGTTGGTGGTTCTTCCGGCTCGAGGAAGCCGTCTGGATCGAAGAAAGTGAGGAAAAGGCCCAAGGTTGTTATGAGTGATTCAGAATCGAGCGATGAGCAGCTATTGATGCCTCCTGCCAGGAAGCTTGGCCCGGAGACTATTCGAGTTTGTAATGGTTTGACTGCGATAGAGCGCGGTATGGTTGGCACTGGCACCGACAGCGGTGAAGTCAGTAGGAAGAGGGAGAGAGTTGAGGAAACTAGACGTAATGGGGATGGCGTGGTCGAGGAGAATGGCTTGGAGAGGAGGGGGAAGAAACAACGTACATTGGAGGTGTTTGATTTTGATGAGTACGATGGTATGGATGTGGAGTTGATGAGAAGGAGGCGTTTCGATAATAATGGGGTTGGTTTAGGTGGAGGGAGGCCGATGGGAACCGTGCACGCGGCTAGAGGTAGCGTTGATAGGGAATTTGAGACCGGTTCAAGCAGGCACATTGTGGAAAAGAGGAAAAAATCCTATCATGACCGAGCAAGTGGCTTGAATCTGGGAGACAGTGTGGACCATAGTAAGTTTAAGAAGAGTAGGGATAGAGCTCAGCGTCCTCTACCCTCGTTGAGGGAGAAGTTTACTTCTGATGAGCCCATTAGGGTTCAAGGGAAAAATGGTGTTTTGAAGGTGATGGTTAATAAGAAGAAGGCAGGTGAGCCACTACTACACTATGACCGCCGCAAGCCTACAGACAGCAGACAAAGTTTGAGGGCTGAGGGCACTTCTAAGAGGAATGATCTGATCCGTCCTTCATCACACGTGGAAACAAAACCTGCTAAGAAACAGGGTTTTCTTGTTAGGCCAGAGAAGAAACAGATAGCAACAAGAAAATTATTACCAAGTAAGGACAGAAAGGTTGATGAGCAGGATTCAGATAACAGTGATGCATCATTAAATCTGGGAGTAAAAAATATTAAAGCTTGTAAATCTTCAAAGAAGATAACCTCTGATAATGTACTGACTCCTAAGCAAGAAAAACTCCCAGCTACAAAAACTAAAGAAGGAAAAATCAGGCGCGGCAGCGGCACAGAAAAGCAGAAACTGCGAGAACAGATACGGGAGATGCTCCTGAATGCAGGTTGGACAATAGACTATCGCCCGCGAAGGAATAGAGATTATCTAGATGCAGTTTACATTAATCCCGTGGGGACAGCCTATTGGTCCATCATCAAGGCCTATGAAGCTCTTCAAAAGCAATTGAATTATGATGATCATGAGGCCAAAGCCAAAGGGGAGAATTCTTTTGCTCCTATCTCTGATGATGTGCTCTGTCAATTGACAAGGAAAACTCGGAAGAAGATGGAGAAAGACTTGTTGAAGAACAAGCAAAGAGATGATAGTGATAGTGATAGTGGAAAAGAGCCGCAGATTAAAAGAATTGCCAGAAAAAAGCATGATATGAATGAAACCGATAGTGATAGCAATGACGAGAAGTTAAGCTCCTTTATGAATCAAGGAAGTAAATCAATGAAAGCTAAAATGAACGAAAATGCTGTTAGTGGTGCTAGCTCTAAAAGCCAGAATGCTAGCCATCGCTCAAATGATGTAACTGAAAAGTCATTCTCAGGAAATGATCCTCATCTCCTTAATGGAAGAAAAAGTAGAAAACATGGAAGGTGCACTTTATTAGTTCGTAGTTCAAACAAGGGATTGAATTCAGAATCTGATGGCTTTGTTCCATATTTGGGCAAACGAACAGTGCTTTCCTGGTTGGTTGACTCAGGGGTAGTAGAGGTAGGCCAAAAGGTTCAGTACCGTAGAAGGAAGCGAGTATTGCTGGAGGGATGGATCACAAAAGAAGGCATTCATTGTGGCTGCTGTAGTAAGATCCTCACAGTTTCGAAGTTTGAGCTTCATGCAGGGAGCAAATTTCCCCAGCCATATCAAAACATATATTTGGATTCTGGAGTTTCTCTTCTACAGTGCCAGATAGATGCATGGGAAAGACAAGAGAATTCTGAGAAAATCAGTTTCCATTCAGTAGATATTGATGGTAATGACCCAAATGATGACACCTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCGACATTTCATCAGAATTGCTTGGATATACAGATGCTTCCCCCTGGGGAATGGCATTGTCCAAATTGCACCTGTAAATTTTGTGGACTAGCCAGTGTAGCTATTGGCGGAGAAGATAATGCAACTGTATCTGCGCTGCATGCTTGTGACTTGTGCGAGAAAAAATATCATGATTGTTGTACCAAGGATATGGGTGCCGTTCATACTAACTTCAATGCGTCAGGGCCTTCCTTTTGTGGAAAAGGCTGCAAAGAGCTTTTTGAGCACTTGAACAAGTACCTTGGTACCAAGCACGAACTTGATGCAGGCTTTACATGGTCTCTTATTCATAGAACAGCTGATGACTCAAAGGCAGGTAATAGGGGAATTACCCAGAGGGTGGAATGCAACTCCAAGCTAGCTGTTGCACTGACCATGATGGATGAATGCTTTTTACCTGTTGTTGATAGGAGGAGTGGGATCAATTTAATCCATAATGTTTTGTATAATACTGGGTCAAACTTCAGTCGGCTGAATTATAGTGGCTTTTATACTGCTATTTTGGAGAGAGGGGATGAAATAATTTCTGCAGCATCTATCAGATTCCATGGGACCAAGTTAGCAGAGATGCCATTCATTGGAACTCGCCATGTGTATAGGCATCAGGGAATGTGCCGCCGGCTTTTTTCTGCCATAGAATTGGCTCTTTGCTCTCTGAAGGTTGAGGAACTGGTTATTCCCGCAATTTCTGAACTCATTCATACATGGACAACAGTTTTTGGCTTTACACATCTTGAGGAATCACTCAGGCGAGAAATGAGGTCATTGAACATGTTGGTCTTCCCTGGCATTCATATGTTACAGAAGCAGCTAGTTGAGCAAGGTGCTGAGAAAATTGAAAATGGAGATTTGGTTTGTATTAAGCCCAATAAGGCTAATAAGTTAGCTATGGATTCCTTGACTCTGCAAGATCCTCATGGAAGTAATGATGCTGGTTCAAATCCCGCCAATGTGTTAAGCAATGAATGTAGTGATACTTCTCAAGATCTAAACAATCAAGTTTTGATTGGCAGTACTGTATGCTCCAAATCTCATTCTGAGGAAAGATTATCTGATTCTGATTCGGATGATTGTGCTTCACCTTCTAGCACTAGTCATGGAGTGCTCAAAAAGAAAAATAAATTAGCGATAACTTCTCCTGTTAATGATAAATCGCATCCTTCTCCAAAATGTCAACTCATTTCACCAAATGACTTTTCTATGACTAGTCTTCCATTGGATGCTCCAGATTGCCATGAAATTCCAGCTTTGGATCCTAAAACTGTTGCTTCTGACCCTGGTACTGCAAAAAACCTTGTTGATACTGTTTCTGACAGGAATTGCCATGCTGTCACTGATATGAATTGTGATTCACCAAAGCTCAACAGAAATCCAGTGTTGGATTCTCAAGTGGCTAATAATGATTTTGCTTTGAAAGAGGTTGATTTAAGTGATGCATGTGATGAGGTTCTTGGAGCTGGTCCCTCAATGAATTTATCTCAATAG 3735 0.4295 MEPGTRVPGPSGVVVKNRGSSGCLIVRKNGDGGLGGGVVGGSSGSRKPSGSKKVRKRPKVVMSDSESSDEQLLMPPARKLGPETIRVCNGLTAIERGMVGTGTDSGEVSRKRERVEETRRNGDGVVEENGLERRGKKQRTLEVFDFDEYDGMDVELMRRRRFDNNGVGLGGGRPMGTVHAARGSVDREFETGSSRHIVEKRKKSYHDRASGLNLGDSVDHSKFKKSRDRAQRPLPSLREKFTSDEPIRVQGKNGVLKVMVNKKKAGEPLLHYDRRKPTDSRQSLRAEGTSKRNDLIRPSSHVETKPAKKQGFLVRPEKKQIATRKLLPSKDRKVDEQDSDNSDASLNLGVKNIKACKSSKKITSDNVLTPKQEKLPATKTKEGKIRRGSGTEKQKLREQIREMLLNAGWTIDYRPRRNRDYLDAVYINPVGTAYWSIIKAYEALQKQLNYDDHEAKAKGENSFAPISDDVLCQLTRKTRKKMEKDLLKNKQRDDSDSDSGKEPQIKRIARKKHDMNETDSDSNDEKLSSFMNQGSKSMKAKMNENAVSGASSKSQNASHRSNDVTEKSFSGNDPHLLNGRKSRKHGRCTLLVRSSNKGLNSESDGFVPYLGKRTVLSWLVDSGVVEVGQKVQYRRRKRVLLEGWITKEGIHCGCCSKILTVSKFELHAGSKFPQPYQNIYLDSGVSLLQCQIDAWERQENSEKISFHSVDIDGNDPNDDTCGICGDGGDLICCDGCPSTFHQNCLDIQMLPPGEWHCPNCTCKFCGLASVAIGGEDNATVSALHACDLCEKKYHDCCTKDMGAVHTNFNASGPSFCGKGCKELFEHLNKYLGTKHELDAGFTWSLIHRTADDSKAGNRGITQRVECNSKLAVALTMMDECFLPVVDRRSGINLIHNVLYNTGSNFSRLNYSGFYTAILERGDEIISAASIRFHGTKLAEMPFIGTRHVYRHQGMCRRLFSAIELALCSLKVEELVIPAISELIHTWTTVFGFTHLEESLRREMRSLNMLVFPGIHMLQKQLVEQGAEKIENGDLVCIKPNKANKLAMDSLTLQDPHGSNDAGSNPANVLSNECSDTSQDLNNQVLIGSTVCSKSHSEERLSDSDSDDCASPSSTSHGVLKKKNKLAITSPVNDKSHPSPKCQLISPNDFSMTSLPLDAPDCHEIPALDPKTVASDPGTAKNLVDTVSDRNCHAVTDMNCDSPKLNRNPVLDSQVANNDFALKEVDLSDACDEVLGAGPSMNLSQ* 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0524 1244 MobiDBLite consensus disorder prediction 483 524 - -
Lja5g0524 1244 MobiDBLite consensus disorder prediction 1052 1074 - -
Lja5g0524 1244 MobiDBLite consensus disorder prediction 483 530 - -
Lja5g0524 1244 CDD PHD2_CHD_II 721 760 - -
Lja5g0524 1244 Pfam PHD-finger 721 763 IPR019787 -
Lja5g0524 1244 MobiDBLite consensus disorder prediction 106 120 - -
Lja5g0524 1244 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1217 - -
Lja5g0524 1244 ProSitePatterns Zinc finger PHD-type signature. 721 760 IPR019786 -
Lja5g0524 1244 ProSiteProfiles Zinc finger PHD-type profile. 718 763 IPR019787 -
Lja5g0524 1244 Pfam Tify domain binding domain 643 693 IPR032308 -
Lja5g0524 1244 MobiDBLite consensus disorder prediction 1 20 - -
Lja5g0524 1244 SUPERFAMILY FYVE/PHD zinc finger 710 766 IPR011011 -
Lja5g0524 1244 MobiDBLite consensus disorder prediction 1097 1123 - -
Lja5g0524 1244 SMART PHD_3 720 761 IPR001965 -
Lja5g0524 1244 MobiDBLite consensus disorder prediction 267 340 - -
Lja5g0524 1244 MobiDBLite consensus disorder prediction 199 245 - -
Lja5g0524 1244 PANTHER PHD FINGER FAMILY PROTEIN 1 1217 - -
Lja5g0524 1244 MobiDBLite consensus disorder prediction 267 345 - -
Lja5g0524 1244 MobiDBLite consensus disorder prediction 542 581 - -
Lja5g0524 1244 MobiDBLite consensus disorder prediction 97 120 - -
Lja5g0524 1244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 710 811 IPR013083 -
Lja5g0524 1244 MobiDBLite consensus disorder prediction 542 572 - -
Lja5g0524 1244 MobiDBLite consensus disorder prediction 25 78 - -
Lja5g0524 1244 MobiDBLite consensus disorder prediction 218 245 - -
Lja5g0524 1244 MobiDBLite consensus disorder prediction 1051 1074 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0524 Lja-Chr5 4572379 4580030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0524 1 1022 PHD Transcription Factor Family AT4G14920 49.231 0.0 880
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja5g0524 TDBD 1.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0524 - - mtr:MTR_1g103830 1728.76