Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0522 ATGAATGGTGCTGCAAGTGTTGAGACAGACTCTGAGTTTGTGGAAGTTGATCCTACAGGAAGATATGGACGATACAATGAAGTTCTTGGCAAAGGAGCTTCCAAGATAGTCTACAAAGCATTTGATGAGTATAAAGGTATAGAAGTAGCATGGAACAAAGTAAAGCTTTATGACTTTTTGCAGAATCCTGAAGACATTGAGAGGCTATACTGTGAAATTCATCTTCTCAAGACATTGGAGCACAAGAACATCATGAAGTTCTATACTTCTTGGGTTGATATTGCAAACAGGCACATCAACTTTGTCACTGAGATGTTTACCTCCGGGACTCTAAGACAGTACAGGCTTAAACACAAAAAGGTTAACATCAGAGCTGTTAAGCACTGGTGCAGGCAGATATTGGAAGGGCTTCTCTATCTCCACAATCATGACCCTCCTGTTATCCATAGAGACCTCAAGTGTGATAACATTTTCATCAATGGCAACCAAGGGATAGTCAAAATTGGTGATCTTGGCCTGGCTGCGTTTCTCCGCAAATCTAAAGCTGTTCGCTGTGTTGGCACACCTGAGTTTATGGCTCCCGAAGTGTACGAAGAGGACTACAACGAATTGGTTGACATATACTCTTTTGGAATGTGCATCTTGGAGATGGTCACGTTTGAATATCCATATAGTGAATGCAGCCATCCTGCTCAAATTTACAAGAAAGTTGTCTCAGGAAAGAAGCCAGAAGCTCTTTACAAAGTAAATGATCCTGAGGTTAGGCAGTTTGTAGAGAAATGCTTAGCTACTGTATCTCTCAGACTTTCAGCTAAGGAACTCTTGGATGACCCTTTTCTCCAAATTGATGATTATGGATCTGATTTGATAGTAGAGAAGTATCAAAGAGATTGCTATGAAGTAACACCAACAGTTAGGCAACCTCTGAATGGAATTCATAGCATTAATAACACCTTAATGAGTGTGTACAGCGAAAATCTTGGTGGTTTTGGACCTGTATCTGAATCGGATTACCATCAAGGTGATTTTGAACCATGTGAAATTGCTCTATTTGATTGTGAAGAGGATGATGATTTGGCTGTAGATGACACCACAATCATAGGTAGAAGAAGAGATGATGGCATCTTTTTGAGAATCAGAATAGCAGATAAAGAAGGTCAAGTTCGAAACATCTACTTCCCATTTGACACAGAGACTGATACTGCATTGAGCGTTGCAAATGAAATGGTTGCTGAGCTTGACATCACTGATCAAGATGTAACAAAATTAGCAAACATGATAGATGAACAAATTGCAACCTTGGTCCCAGGGTGGAAAACAGAACCCAGAACAGAGGAAGATTCCGAACGTTCAAGTTTCTGCGTTAATTGTGCTGAAAGGAATTCCTTAATTGATTATGTTCAATCAGACAAACCATGTGCCAAGAACCTGCAATTTCTTCATTGTTCTAAAACTGGATGTGCTGCAGTTCATGGCCGATTTGAGGAAATCACATTCCAAGTTGAAGGGTCTGGAAATAGTGCTACAGGAAATCCACCAGCTGCATCAAGCCAAGTCAATGGCATTGGTTATACCGATATCTGGGCTCAGCGAGAGGAACCAGAGTTATGTACTGAAGAGTTAAAAGACAAACATTGTGACCAAGCTAATGAGGCATCAAACCTACCAACCATCAAGGAGGAAGAGAGAACAATTGATGTTGATGACCACAGTGATCTCAATACCAGAAAGCTTCCTTCTAGCCCTGCATCAGATGGTGTTCTCTTAGACTACGAGAATGAAATTAGGCAAGAACTAAGATGGCTCAAAGCAAAGTACCAAATGCAGTTAAGAGAGCTTAGAGACCAACAACTTGGGGGTAAACCAAAATTTACTAGCTTATCTCCTGACACTGATGAATTAGAGCATGGGAGAGATGGGGCTCTGAGGCTATCAGCTAAATCCCACTTGAGGATACAAAACAACAAACAGTTGATGAGATCTTTGGCTTCTGGGAAGCATTTTCATGCTGACGCTGAGCAATGCACCACTTTGGTTGATCAAATGATTCAAAATGGTGATGTGACTAGTGGGGCTAACAGTCCTGAGCAACTAATGTTCACAGCCAAGGATTTCTTCACAGGAGCCTTGCTTCCACACCCCCTTCATAGGGCAACCTCGCTTCCTGTTGATGCAGTAGATGTTTAG 2187 0.4134 MNGAASVETDSEFVEVDPTGRYGRYNEVLGKGASKIVYKAFDEYKGIEVAWNKVKLYDFLQNPEDIERLYCEIHLLKTLEHKNIMKFYTSWVDIANRHINFVTEMFTSGTLRQYRLKHKKVNIRAVKHWCRQILEGLLYLHNHDPPVIHRDLKCDNIFINGNQGIVKIGDLGLAAFLRKSKAVRCVGTPEFMAPEVYEEDYNELVDIYSFGMCILEMVTFEYPYSECSHPAQIYKKVVSGKKPEALYKVNDPEVRQFVEKCLATVSLRLSAKELLDDPFLQIDDYGSDLIVEKYQRDCYEVTPTVRQPLNGIHSINNTLMSVYSENLGGFGPVSESDYHQGDFEPCEIALFDCEEDDDLAVDDTTIIGRRRDDGIFLRIRIADKEGQVRNIYFPFDTETDTALSVANEMVAELDITDQDVTKLANMIDEQIATLVPGWKTEPRTEEDSERSSFCVNCAERNSLIDYVQSDKPCAKNLQFLHCSKTGCAAVHGRFEEITFQVEGSGNSATGNPPAASSQVNGIGYTDIWAQREEPELCTEELKDKHCDQANEASNLPTIKEEERTIDVDDHSDLNTRKLPSSPASDGVLLDYENEIRQELRWLKAKYQMQLRELRDQQLGGKPKFTSLSPDTDELEHGRDGALRLSAKSHLRIQNNKQLMRSLASGKHFHADAEQCTTLVDQMIQNGDVTSGANSPEQLMFTAKDFFTGALLPHPLHRATSLPVDAVDV* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0522 728 Gene3D - 374 467 - -
Lja5g0522 728 SMART serkin_6 23 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0522 728 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 377 432 IPR024678 GO:0004674|GO:0005524
Lja5g0522 728 SUPERFAMILY Protein kinase-like (PK-like) 26 281 IPR011009 -
Lja5g0522 728 Gene3D Transferase(Phosphotransferase) domain 1 106 285 - -
Lja5g0522 728 Coils Coil 596 616 - -
Lja5g0522 728 MobiDBLite consensus disorder prediction 556 575 - -
Lja5g0522 728 Gene3D Phosphorylase Kinase; domain 1 6 104 - -
Lja5g0522 728 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 717 - -
Lja5g0522 728 MobiDBLite consensus disorder prediction 554 579 - -
Lja5g0522 728 ProSiteProfiles Protein kinase domain profile. 23 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0522 728 Pfam Protein kinase domain 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0522 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Lja5g0522 728 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1-RELATED 1 717 - -
Lja5g0522 728 CDD STKc_WNK 21 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0522 Lja-Chr5 4553672 4557418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0522 1 631 MAP Kinase Kinase Kinase AT3G22420 49.037 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lja5g0522 Pkinase 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0522 K08867 - gmx:100804179 1150.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0522 5 4553672 4557418 Lja5g0522 5 4553672 4557418 ECH