Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0479 ATGAATTCCTACAGCATTTCAGCACTGCAAAAAATCCCAATTCTCTTATTGTCCCTTGCATTTCTCAACCAATATTACATAGCTGCTATACAAGTTAATAACAAGCCTCCACCTTACTATGAATGTTCAAGCAACATCACTAGCACTTACACCCCCAACAGCACCTTCCACACCAACCTTCAAACTCTTCTGTCATGGCTTTCCTCCAACGCCACACCCACGGTTCAAGTCTACAACGCCGCTGTTGTGGAAAACAACAACAACAACACGGTCTATGGCCTCTTCATGTGCAGATTTGACGGGGAACCGAACTGCGAAGACTGCGTGATAAACAACACAAAAGTGATAACAAAAGTGTGTCCCATGGCAAAAGAAGCCATACTTTGGGACGCTAATTGCATGGTGCGTTACTCCAATCATTATTTCCTCACCACAGTGGAAGGGAGTCCTAAAATCACCGCGATGAACGATGAGGACTACGTGGGTCAGATTGGCCACTTCAACAGCTTACTCTGGGACACTATGAATGAGGTGAGAAACAGAACAGTAAATGCTCCTCCAGGATCCATGAAGTATGCTTACAAGTCAGTGAACATCACAGCTAACCAAACACTATATGCAAGTGAATATTGTACCCCTTACCTTTCCCGAGAAAACTGCAGTTGGTGTCTCAATGATGCCTTGGCGGAAGTACAAACCTCTTGTTGCAAAGGGAAAAGGGGAGGCAGAGTTATTTACCCCAGTTGCGGTCTTAGATTCGAACTATATCCATTTTATCATGCGGCCACTTCTATTTCGCCAACTGTTCCTCTTAACCCTTTGGCACCACCAGAACCAGGAAAAAGAAAACATTCAAAAACAGTAATCATTGTGGTTGTCACAGTTGTTGTCTTAGGGGTGCTTTTATCTTTGGGTTGCGGCTGTTTCGTGAGCAGGGGACGGAGGAAGAATCACGGGAGTATTCTCAAAGAAAGCTTTGGGAATGGAGTTTCTATTTTGGAATCCTTTTGGTTTGACTTAGGCGAAATTGAAGCTGCAACGAGTAAGTTTGCTAAAGAAAATATGATTGGAAAAGGTGGATTTGGAGAAGTCTACAAGGGTGTGCTTTCCAATGGGCAAGAGATAGCTGTGAAGAGGCTTTTGGGAAGCTCTGGTCAAGGTGCAATAGAATTCAAGAATGAGGTCCTTGCTATAGCTCAACTTCAACACAAAAATCTAGTGAAATTACTAGGATTTTGTGTGGATGGGCAAGAAAAGATACTCATATATGAGTATGTACCCAACAAGAGTCTGGACTACTTTTTATTAGATCCCCAAAAGAGAAAACAATTAAATTGGTTGGAGCGACGCAAGATTATAGGAGGAATTGCTCGAGGAATTCTTTATCTCCATGAGGATTCACGCCTCAAAATTATACACCGAGATCTCAAACCTAGTAATGTTTTGTTAGACAGTGACATGAATCCAAAAATCTCAGATTTTGGAATGGCTAGAATTGTTGCTGCTGATAACATTGAAGAAAATACTCATAGAATTGTTGGGACTTTCGGTTACATGTCTCCAGAGTATGCAATGAATGGTCACTTTTCTGTGAAATCTGATGTGTTCAGTTTCGGAGTCATGGTCCTAGATATTATTAGTGGGAAAAGGAAAGGTTCTTACCCTGATTCAGACATTTCAAATCGGGTTGATAACATACGGAAATATGCTTGGACAAAGTGGATAGACCAAACACCATTAGAACTATTAGATCCTCATCTGGAAGGATCATATTCTGAACATGAAGTGATTAGATGCATCCATATCGGTTTATTATGTGTACAAGAAGACCCGAATGACAGACCAACAATGGCAAAAGTTGTTTCTTTCCTGAATAATCCTACAATAGATTTGCCAACACCTACTCAGCAATTATTTTTCATGCATAGAAAAATGGAGGATTTTGATGATTCAAACTATGAATCTATCAATAACATGACAGAGAGTCAATATTCTCCTAGATAA 2004 0.4077 MNSYSISALQKIPILLLSLAFLNQYYIAAIQVNNKPPPYYECSSNITSTYTPNSTFHTNLQTLLSWLSSNATPTVQVYNAAVVENNNNNTVYGLFMCRFDGEPNCEDCVINNTKVITKVCPMAKEAILWDANCMVRYSNHYFLTTVEGSPKITAMNDEDYVGQIGHFNSLLWDTMNEVRNRTVNAPPGSMKYAYKSVNITANQTLYASEYCTPYLSRENCSWCLNDALAEVQTSCCKGKRGGRVIYPSCGLRFELYPFYHAATSISPTVPLNPLAPPEPGKRKHSKTVIIVVVTVVVLGVLLSLGCGCFVSRGRRKNHGSILKESFGNGVSILESFWFDLGEIEAATSKFAKENMIGKGGFGEVYKGVLSNGQEIAVKRLLGSSGQGAIEFKNEVLAIAQLQHKNLVKLLGFCVDGQEKILIYEYVPNKSLDYFLLDPQKRKQLNWLERRKIIGGIARGILYLHEDSRLKIIHRDLKPSNVLLDSDMNPKISDFGMARIVAADNIEENTHRIVGTFGYMSPEYAMNGHFSVKSDVFSFGVMVLDIISGKRKGSYPDSDISNRVDNIRKYAWTKWIDQTPLELLDPHLEGSYSEHEVIRCIHIGLLCVQEDPNDRPTMAKVVSFLNNPTIDLPTPTQQLFFMHRKMEDFDDSNYESINNMTESQYSPR* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0479 667 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
Lja5g0479 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Lja5g0479 667 ProSiteProfiles Protein kinase domain profile. 350 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0479 667 Gene3D Transferase(Phosphotransferase) domain 1 426 631 - -
Lja5g0479 667 Gene3D Phosphorylase Kinase; domain 1 319 425 - -
Lja5g0479 667 Pfam Salt stress response/antifungal 165 256 IPR002902 -
Lja5g0479 667 Pfam Salt stress response/antifungal 42 139 IPR002902 -
Lja5g0479 667 Pfam Protein kinase domain 351 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0479 667 ProSiteProfiles Gnk2-homologous domain profile. 37 142 IPR002902 -
Lja5g0479 667 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 28 646 - -
Lja5g0479 667 SUPERFAMILY Protein kinase-like (PK-like) 335 648 IPR011009 -
Lja5g0479 667 CDD STKc_IRAK 356 626 - -
Lja5g0479 667 SMART serkin_6 350 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0479 667 ProSiteProfiles Gnk2-homologous domain profile. 148 258 IPR002902 -
Lja5g0479 667 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 28 646 - -
Lja5g0479 667 Gene3D - 39 142 IPR038408 -
Lja5g0479 667 Gene3D - 151 258 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0479 Lja-Chr5 4193142 4196059 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0479 32 650 Receptor kinase-like Gene Family AT4G05200 47.385 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja5g0479 Pkinase 4.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0479 - - gmx:100793219 727.243