LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja5g0477	ATGCCCTTATATTTCATGATGGTTTACAATCTACTCTTTCTTGTAACTTTCAATTCAGTAACTTCATTCAGGGAAAAAGAGACTGCTATAGATAAAAACAGTCATGCTTACTATAACTGCACAAGGAACACCACTTTTGCTGCCAACAGCTCTTACCCTTCCAACATCAAAACACTCCTGGATTGGCTCTCCTCGAATGGCACTAACAATGCCAGTTCCCACACCGCTACAGTTGCTACCAAAAACACTACTGCGGACACTGTCTACGGTCTCTTCTACTGCAGAGCAGACCTCAACCCACAAACCTGCAAAACGTGCGTGACAGAATCATCCAAAATCTTATCATCTTTATGCACCATGGCAAAAGAAGCCATCATCTGGTACGGAGTATGCTACGTGCGCTACTCTGATCGTCGATTCTTTTCCACGGTGGAGGAAAGTCCTAAACTTTCGGCCATGAACGATCAGGATTATGTGGGTCACATTGAGCACTTCAACAATATCCTATGGGACATGTTGAACGAGTTGAGAACTGAGGCTGCAAATGCTTCCACTAGATTGGCTGACAAGACAGCAAACATCACGGAGAAGCAAAAGCTTTATGGTTCCGCTTGGTGCGTTCCGAGCCTATCCCCGGAGAACTGCAGCTGGTGTCTCAGCGATGCCATAGCAGAAGTTCCAACGAGTTGCTGCAGAGGAAAAGTTGGAGGCCATATAGTATATCCCAGTTGCGGTATTAGATACGAGTTGTATCCATTTCACAAGGCACACGACGACGACGGGATGCCATCATCACCACCGCCCCAAAGTACTCACACTGCGGCGGCTCCACCAGGAAAAGGAAAACAGAGGACACTAACAATAATCATGATCGTTATTGCAACTGTTGTTATACTGGCGCTTTTAATCTTGGGCTACTATCATTTTCTCTATAGAAAAGAAGAAATGAATCATCATGATGCTCTCAAAGAAAGCTTTAGGCATGGGCATGACATTTCCACTTCGGAGTCCTTGCAATATGAATTAACCACAATTGAAGCTGCAACAAATAGATTTGCAACAGAAAACATGATAGGCAAAGGTGGATTTGGAGAAGTCTACAAGGGTATTCTTTCAGATGGACAAGAAATTGCTGTGAAGAGGCTTACAAGAAGCTCTGGGCAAGGTGAAGTAGAGTTTAAAAATGAGGTTGAGGTTATAGCCAAGCTTCAACACAGAAATCTAGTAAGGTTACTAGGATTTTGCTTGGAAGATGAAGAAAAGATACTTATCTATGAGTATGTACCAAACAAGAGCCTTGATTACTTTTTATTTGATACCCAGAAGCAAAAACTATTACCTTGGTCTCAACGTCAGAAGATTATAAAAGGGATTGCTCGAGGAATTCTTTACCTCCATGAAGATTCACGCCTCAAAATAATACACCGTGATCTGAAACCTAGCAATGTTTTACTAGATAGTAATATGAACATAAAAATTTCAGATTTTGGCATGGCGAGAATCGTCGCTGCAGATGAAATTGAAGAAAGTACAGGCAGAATTGTTGGGACATATGGCTATATGTCTCCAGAATATGCAATGCATGGACAATTCTCTGTGAAATCTGATGTGTTTAGTTTTGGGGTCATGGTTCTAGAGATTATTAGTGGAAAGAGGAAAGGCTCTTCTTCTCAATCAGGGTGTGTTGATGACATCCGGAGATATGCTTGGACAAAATGGACAGAGGAAAGACCACTGGAACTATTGGATCCTAATATAGAAGGACCTTATTCCCCGGAAGAGGTCATCAAATGCATCCACATCGGTTTGCTATGTGTTCAGGAAGACCCAAATGATAGACCTACAATGGCAACAATAGTGTTCTACCTCAACAGCCCTTCAATCAACTTGCCATCCCCTCACGAACCACCATATTTTCATCGTAGTAGAAGAGGAGAAAACATCGCAATCAACGGGGAATCGGCTAATATTCTCGATTCCATCAATGAAAATACTTTGACCCAATTCTTTCCCCGTTAA	2019	0.422	MPLYFMMVYNLLFLVTFNSVTSFREKETAIDKNSHAYYNCTRNTTFAANSSYPSNIKTLLDWLSSNGTNNASSHTATVATKNTTADTVYGLFYCRADLNPQTCKTCVTESSKILSSLCTMAKEAIIWYGVCYVRYSDRRFFSTVEESPKLSAMNDQDYVGHIEHFNNILWDMLNELRTEAANASTRLADKTANITEKQKLYGSAWCVPSLSPENCSWCLSDAIAEVPTSCCRGKVGGHIVYPSCGIRYELYPFHKAHDDDGMPSSPPPQSTHTAAAPPGKGKQRTLTIIMIVIATVVILALLILGYYHFLYRKEEMNHHDALKESFRHGHDISTSESLQYELTTIEAATNRFATENMIGKGGFGEVYKGILSDGQEIAVKRLTRSSGQGEVEFKNEVEVIAKLQHRNLVRLLGFCLEDEEKILIYEYVPNKSLDYFLFDTQKQKLLPWSQRQKIIKGIARGILYLHEDSRLKIIHRDLKPSNVLLDSNMNIKISDFGMARIVAADEIEESTGRIVGTYGYMSPEYAMHGQFSVKSDVFSFGVMVLEIISGKRKGSSSQSGCVDDIRRYAWTKWTEERPLELLDPNIEGPYSPEEVIKCIHIGLLCVQEDPNDRPTMATIVFYLNSPSINLPSPHEPPYFHRSRRGENIAINGESANILDSINENTLTQFFPR*	673

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja5g0477	672	Gene3D	Transferase(Phosphotransferase) domain 1	428	629	-	-
	Lja5g0477	672	ProSiteProfiles	Gnk2-homologous domain profile.	34	140	IPR002902	-
	Lja5g0477	672	CDD	STKc_IRAK	358	624	-	-
	Lja5g0477	672	ProSitePatterns	Protein kinases ATP-binding region signature.	358	380	IPR017441	GO:0005524
	Lja5g0477	672	Gene3D	Phosphorylase Kinase; domain 1	313	427	-	-
	Lja5g0477	672	Pfam	Salt stress response/antifungal	40	137	IPR002902	-
	Lja5g0477	672	Pfam	Salt stress response/antifungal	162	251	IPR002902	-
	Lja5g0477	672	Pfam	Protein tyrosine and serine/threonine kinase	354	621	IPR001245	GO:0004672\|GO:0006468
	Lja5g0477	672	SUPERFAMILY	Protein kinase-like (PK-like)	338	643	IPR011009	-
	Lja5g0477	672	Coils	Coil	173	193	-	-
	Lja5g0477	672	ProSiteProfiles	Protein kinase domain profile.	352	628	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja5g0477	672	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	473	485	IPR008271	GO:0004672\|GO:0006468
	Lja5g0477	672	Gene3D	-	149	253	IPR038408	-
	Lja5g0477	672	Gene3D	-	32	140	IPR038408	-
	Lja5g0477	672	ProSiteProfiles	Gnk2-homologous domain profile.	146	253	IPR002902	-
	Lja5g0477	672	MobiDBLite	consensus disorder prediction	257	280	-	-
	Lja5g0477	672	SMART	serkin_6	352	628	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja5g0477	672	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	9	672	-	-
	Lja5g0477	672	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	9	672	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja5g0477	Lja-Chr5	4183028	4187592	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja5g0477	15	672	Receptor kinase-like Gene Family	AT4G05200	43.750	0.0	570

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Lja5g0477		PK_Tyr_Ser-Thr	1.4e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja5g0477	-		-	lja:Lj5g3v2060950.1	1075.85