Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0476 ATGATCCCCAAGTTTCAAAACAACCTATTACTTTTCCTTCTTCTTAGCAGCACCCTTTTGTTCACTGTCTCAGCATCTATCTTCAACAACGTAAGCTGCACAAGCAACAAAACATTCACTCAAAACAGCACCTTCCACTTCAACCTCAACACCCTTCTCTCTTCCCTCTCCTCCAACGCCACCGGCGATGTCAGGTTCTTCAACACCACCGCCGGCAAAGCCACCGACGCCGTCCACGGCCTCTTCATGTGCAGAGGAGATGTCCCCTACGCGCTCTGCAGAGAGTGCGTGGGATTCGCAACGCAAACCATAGCCTCATCTTGCACCTCTGCAAGAGAGGCTGTGATCTGGTACAACGAGTGCTTGCTACGTTACTCTGACCGGTTCATCTTCTCCAGAATGGAAACCATGCCCAGGTACCAGATCAAGATCCCAATGGGGGATCCTGTAGTTTTGCACACTCGCAGATTCTACACCGCATTGGGATCCATTTTGAATGCTCTGCCGAAACAAGCAGCTCTGGCTCTTGCTGCTAAGTCCAACAGATACGCCGTCAAGCAGGAAAACGCCTCCGCCGCTGTAACCCTCTACGGCATCGGGCAGTGCACGCCGGACTTGTCGGCCGCCGACTGCGCGCGGTGTGTGAGGGTTGCTGCGGCGGAGTTTCCTAATTCCTGTTGCGGTGGTAGCATTGGGGAAAGTGTTATGTTTCCCAGTTGCTTTGTTAGGTATGAAACGTACCCGTTTTATCAGCATTCAGGAACCTCAGCATCAGGGGAAAGAAACATTCCAACACCTGTGTTGGCTATCATTGTTGTATTGGTTGTTACTTTGGTGATGGTTTTCTTCTTTGGCTTCTGTTTCTTATGGATTAAAGCTAGAAAGAGACGCAAGGCCAGCTTTCGAGAAGATCATGGGCTTGAGGTTAATACAGTGGAGTCCTTGCAGTTTGATTTGGCTACAATTGAAGTAGCAACGGACAAGTTCTCTGAATACTGCAGGATAGGCAAAGGGGGATTTGGACAAGTCTACAAGGGAATCCTTCCTAGTGGACAAGAAATAGCTGTGAAGAGACTGTCCATAAATTCAGGGCAAGGAATGGAGGAATTCAAAAATGAAGTGTTGTTAATAGCCAAACTTCAGCACAGAAATTTGGTGAGGTTAATAGGATTTTGCCTTGATGGTGGAGAGAAAATACTTGTCTATGAATTTGTGCCTTACAAGAGCCTTGATCACTTCCTATTTGAGCCCCAAAATCAAAGACAATTGACTTGGCCTGAACGGTATATTATCATAGAAGGAATTGCTAGAGGAATTCTTTATCTTCATGAAGATTCTCGTCTCAAGATTATACATCGTGACATCAAACCAAGCAATGTTCTGCTAGATAGCAACATGAATCCAAAAATTTCTGATTTTGGCATGGCAAGGATGGTTGATACAGAGCAAATTCAAGGATGTACAAATAGAGTTGTGGGCACATATGGTTATATGTCTCCCGAATATGCAATGCACGGAAGATTTTCGGTGAAGTCTGATGTTTTCAGTTTTGGAGTTATGGTTCTCGAGATTATTAGCGGGAAAAAGAATTCTTGTTCTTTTGACTCATATCGTGTTGATGACCTATTGAGTCATGCTTGGAATCAATGGAAGAATGAATCACCATTGCAGTTGCTGGATCCAATTCTGCTTGAATCTTATAGTCCAAATGAAGTAAACAGGTGTATGCAGATTGGTTTATTGTGTGTCCAAGAAAATCCAGATGATAGACCTGGAATGGGAACTGTTGTTTCATATCTTCATAATCTCTCAGTTGAAATGCCATTTCCTCTTGAACCAGCATTTTTCATGCATGGCAGAACAAGAAGACATTCATCAGCTGAACATGACTCACATTCAGATTTTACACTAAAGAAATATTGGAAAGAATTGATGGGCTGGAGACATACGGTCAAATCTGGCATGTGGGTTGGTGTAAAATAG 1983 0.4428 MIPKFQNNLLLFLLLSSTLLFTVSASIFNNVSCTSNKTFTQNSTFHFNLNTLLSSLSSNATGDVRFFNTTAGKATDAVHGLFMCRGDVPYALCRECVGFATQTIASSCTSAREAVIWYNECLLRYSDRFIFSRMETMPRYQIKIPMGDPVVLHTRRFYTALGSILNALPKQAALALAAKSNRYAVKQENASAAVTLYGIGQCTPDLSAADCARCVRVAAAEFPNSCCGGSIGESVMFPSCFVRYETYPFYQHSGTSASGERNIPTPVLAIIVVLVVTLVMVFFFGFCFLWIKARKRRKASFREDHGLEVNTVESLQFDLATIEVATDKFSEYCRIGKGGFGQVYKGILPSGQEIAVKRLSINSGQGMEEFKNEVLLIAKLQHRNLVRLIGFCLDGGEKILVYEFVPYKSLDHFLFEPQNQRQLTWPERYIIIEGIARGILYLHEDSRLKIIHRDIKPSNVLLDSNMNPKISDFGMARMVDTEQIQGCTNRVVGTYGYMSPEYAMHGRFSVKSDVFSFGVMVLEIISGKKNSCSFDSYRVDDLLSHAWNQWKNESPLQLLDPILLESYSPNEVNRCMQIGLLCVQENPDDRPGMGTVVSYLHNLSVEMPFPLEPAFFMHGRTRRHSSAEHDSHSDFTLKKYWKELMGWRHTVKSGMWVGVK* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0476 660 ProSiteProfiles Gnk2-homologous domain profile. 138 249 IPR002902 -
Lja5g0476 660 Gene3D - 26 129 IPR038408 -
Lja5g0476 660 Gene3D - 150 249 IPR038408 -
Lja5g0476 660 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 8 628 - -
Lja5g0476 660 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
Lja5g0476 660 SMART serkin_6 329 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0476 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Lja5g0476 660 SUPERFAMILY Protein kinase-like (PK-like) 315 628 IPR011009 -
Lja5g0476 660 Gene3D Transferase(Phosphotransferase) domain 1 406 608 - -
Lja5g0476 660 CDD STKc_IRAK 335 603 - -
Lja5g0476 660 ProSiteProfiles Gnk2-homologous domain profile. 27 130 IPR002902 -
Lja5g0476 660 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 8 628 - -
Lja5g0476 660 ProSiteProfiles Protein kinase domain profile. 329 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0476 660 Gene3D Phosphorylase Kinase; domain 1 291 404 - -
Lja5g0476 660 Pfam Protein tyrosine and serine/threonine kinase 334 599 IPR001245 GO:0004672|GO:0006468
Lja5g0476 660 Pfam Salt stress response/antifungal 155 247 IPR002902 -
Lja5g0476 660 Pfam Salt stress response/antifungal 33 127 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0476 Lja-Chr5 4175421 4180022 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0476 5 625 Receptor kinase-like Gene Family AT4G05200 44.086 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja5g0476 PK_Tyr_Ser-Thr 3.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0476 - - gmx:100791642 920.228