Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0475 ATGGCTTCAATTTCCATTCTGTTTCATCTTGTTATAGCTATTACCTTCCTCAGTTGCACAACCACTAAAGCACAGGGTCCAAATTATCTCTACCAGGTTTGCTCAACCAACAAAACAACCACCAACAGCACCTTCCAATCAAACCTCAGGACCCTCTTCTCCTCCCTATCTTCCAACGCCACCGCCAACAATGATTTCCACAACAGCACAGTCACCGGCCGGAACTCCTCCGATACGGTGTATGGACTCTTCATGTGCAGGGGCGACACCGACACTTCCACATGCAGCAAGTGCGTCGCAAACGTAACGCAGAAACTCTCCTCCGACTCAGAGTGTTCGTTGTCCAAACAGGCTGTGTCCTGGTACGACGAGTGCATGGTGCGGTACTCCAACCGCTCCTTCTTCTCCACCGCAGACACCAGGCCCGATGCTTTCCTCTTCAACACCGCCAACGTCTCGAACCAGGAAAGCTTCATGAGTTTGTTGTTCGCCACCATGAACGACACGGCGGATGAAGCGGCGAGTTTTTCTGGCGGTGCTAAATACGCCACGAAGGAAGCGAACATTTCTGGGTTTCAGAGTCTTTATTGCTTGGCGCAGTGCACGGAGGACTTGTCGCGTCAAGAGTGTAGAAGATGTCTTGAAGATGCAATTGGGAACCTTCCGCGGTGCTGTGAGGGGAAGCAGGGAGGGAGGGTTTTGTATCCAAGCTGTAATATTAGGTATGAATTGTACCCTTTCTATCAATCCCCTGCTTCTGCCGCACCGGCGCCTTCCCCGGCAGGGATTGTTCCTCCAACCACTTCTTCTAGTTCTGGAGGAAGTAGTGGGATCTCATCAGGGACAATTGTTGCAATTGTGGTTCCAATTGCAGTGGCTCTGCTGCTCTTTGTTGTGGGCGCTTTGTTCTTAATTAAAAGAGCAAGGAAGAAGCGTGGTTCTGCACAAGAACCAAAAACTGGAACTGAGATCAGCACAGTGGAATCCTTGAGATTTGATTTCAGTACAATTGAAGCTGTCACAAACAAATTCTCTGAAGCTAATAAGCTAGGTGAAGGTGGATTTGGTGAAGTTTACAAGGGTGTTCTTCCAAGCGGACAAGAAATAGCTGTCAAGAGACTCTCTAAAGGCTCTGGACAAGGTGGAGAAGAGTTTAAGAATGAAGTTGAGGTGGTTGCAAAGCTTCAACATAGAAATTTAGCAAGACTTCTAGGTTTTTGCTTGGAAGGAGATGAAAAGATACTTGTTTACGAATATGTAGCCAACAAAAGCCTTGACTATATTCTTTTTGATCCTGAAAAACAAAGTTGGTTGGATTGGACAAGACGTTACAAGATTATTGGAGGGATTGCTCGGGGCATTCAATATCTTCATGAGGATTCTAGGCTCAAAATTATTCATCGTGATCTTAAAGCTAGCAACATATTATTGGATGGAGATATGAATCCAAAAATCTCAGATTTTGGCATGGCGAGAATATTTGGAGTGGATCAAACTCAAGGAAATACCAGCAGGATAGTAGGGACATATGGTTACATGTCTCCAGAGTATGCTATGCATGGAGAGTTCTCCGTGAAATCTGATGTATACAGCTTTGGAGTGCTCGTAATGGAGATTATAAGTGGGAAGAAGATTAGTTCTTACAATGAAACAGACTTTTCTCAGGATCTACTTAGCTATGCCTGGAAACTCTGGAAGGATGGAGCACCCTTGGAATTGATGGACCCCACATTAAGAGAATCCTACACTCCAAATGAAGTGATAAGATGCATCCATATTGGTTTACTTTGTGTCCAAGAAGATCCAGAAGATAGACCTACAATGGCAACAATAGTGCTTATGCTAGATAGTAACTCTGTTACTCTACCGGTACCAAATGAGCCTGCATTTTTTGTACACAGTGGAACTGATCCAAGCATGCCAATGAGGCTGCAAATTGATCAATCTACAACTGGTTCAATACAAAAGTCTAACAATGAGATCTCGGTTAGTGAAGTAGATCCTCGATAA 2010 0.4483 MASISILFHLVIAITFLSCTTTKAQGPNYLYQVCSTNKTTTNSTFQSNLRTLFSSLSSNATANNDFHNSTVTGRNSSDTVYGLFMCRGDTDTSTCSKCVANVTQKLSSDSECSLSKQAVSWYDECMVRYSNRSFFSTADTRPDAFLFNTANVSNQESFMSLLFATMNDTADEAASFSGGAKYATKEANISGFQSLYCLAQCTEDLSRQECRRCLEDAIGNLPRCCEGKQGGRVLYPSCNIRYELYPFYQSPASAAPAPSPAGIVPPTTSSSSGGSSGISSGTIVAIVVPIAVALLLFVVGALFLIKRARKKRGSAQEPKTGTEISTVESLRFDFSTIEAVTNKFSEANKLGEGGFGEVYKGVLPSGQEIAVKRLSKGSGQGGEEFKNEVEVVAKLQHRNLARLLGFCLEGDEKILVYEYVANKSLDYILFDPEKQSWLDWTRRYKIIGGIARGIQYLHEDSRLKIIHRDLKASNILLDGDMNPKISDFGMARIFGVDQTQGNTSRIVGTYGYMSPEYAMHGEFSVKSDVYSFGVLVMEIISGKKISSYNETDFSQDLLSYAWKLWKDGAPLELMDPTLRESYTPNEVIRCIHIGLLCVQEDPEDRPTMATIVLMLDSNSVTLPVPNEPAFFVHSGTDPSMPMRLQIDQSTTGSIQKSNNEISVSEVDPR* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0475 669 SUPERFAMILY Protein kinase-like (PK-like) 329 640 IPR011009 -
Lja5g0475 669 Gene3D Transferase(Phosphotransferase) domain 1 420 622 - -
Lja5g0475 669 ProSiteProfiles Gnk2-homologous domain profile. 140 247 IPR002902 -
Lja5g0475 669 ProSiteProfiles Gnk2-homologous domain profile. 27 134 IPR002902 -
Lja5g0475 669 Pfam Salt stress response/antifungal 34 131 IPR002902 -
Lja5g0475 669 Pfam Salt stress response/antifungal 151 245 IPR002902 -
Lja5g0475 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Lja5g0475 669 Gene3D - 26 134 IPR038408 -
Lja5g0475 669 Gene3D - 144 247 IPR038408 -
Lja5g0475 669 PIRSF TyrPK_CSF1-R 6 127 - -
Lja5g0475 669 PIRSF TyrPK_CSF1-R 345 427 - -
Lja5g0475 669 PIRSF TyrPK_CSF1-R 432 662 - -
Lja5g0475 669 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Lja5g0475 669 MobiDBLite consensus disorder prediction 649 669 - -
Lja5g0475 669 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 3 667 - -
Lja5g0475 669 SMART serkin_6 344 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0475 669 ProSiteProfiles Protein kinase domain profile. 344 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0475 669 Gene3D Phosphorylase Kinase; domain 1 305 419 - -
Lja5g0475 669 CDD STKc_IRAK 350 616 - -
Lja5g0475 669 Pfam Protein kinase domain 345 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0475 669 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0475 Lja-Chr5 4169678 4173687 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0475 22 669 Receptor kinase-like Gene Family AT4G05200 54.103 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja5g0475 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0475 - - gsj:114402115 979.163