Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0473 ATGCATCACTTCAAATCCTCTGCAATTTCCATGTTCATGTTGCTGAGCTTTGCAACCAGTGAAGCAGCACCAGTGTACAGCGCAGTAGCCTGCACAGACGACCAATTCGCAACCTACTACCAACCCAACACAACCTTCCAAACCAACTTGAACCTCCTCCTCTCTTCCCTCGTCTCCAACGCCACCCTCCACGACGGATTCTACCGCACCAACATCTCCATCGGAACCCCCAACGAAGTCAAGGGCCTCTTCCTCTGCCGCGGCGACGTCACCCCCTCCGCCTGTCATGACTGCGTCTCCGCCGCCTCCGTAAACATCACGCGCCGCTGCACCAACCAAACGGAGTCCATCATCTGGTACGATGAGTGCATGCTGCGATACACCAACAGCTCCACCCTGAACAACATCGTCCCCGGAACGTCCTTGATGTCCGTTCAAGCCGTCCCTGACTCCGACCGTTCCGGGTTCAGCGATTTTCTGGCGTCCATGCTGAATGAAGCTGCGCAAGAAGCCGTAGATTCTTCTTCAGGTAAGAAATTCGCGACGAGAGAAGCGAATTTCTCGAGCTCGATGAAATTGTACACACTGGCGCAGTGCACGCCTGATTTGTCAAGCTCTGATTGTAACACGTGCTTGCGAAGCGCCATCAGTGCCATTCCTTCATGCTGTGATGGGAAGCGTGGTGCGAGAAACCTGCTTCCTGGTTGTAATATTCGATATGAACTGTACCCCTTTTACAACGTCTCTGCAATTTCGACTCAACCACAGTCCCCTTCTTCTTCTTCAGGAAAAAGCAATGTCGCTGTAATTGTTGCAATTGTTGTCCCAATTGTTGTTGTCTTCGCACTTTTTGTTCTCGGCTGGTACTTCTTGCGGAAGAGGGCAAGCAGGAAGTTGAATACATATATCCGGGATTCAATTCGGGAGGATCTTAACGATGTGGACTGCTTGCAATTTGACTTTGCTACGGTTGAAGCTGCAACAAACAGCTTTTCAGACGAGAACAAGATTGGCCAAGGTGGATTTGGGGTGGTTTATAAGGGGATCCTTCCAAATGGAATGGAGATAGCTGTGAAGAGGTTGTCTGTAACCTCCTTGCAGGGTGCAGTGGAGTTCAGGACTGAAGCTACCCTTGTGGCCAAGCTTCAACACAGAAATTTAACGAGGCTGTTGGGATTTTGCTTGGAGGGGCGGGAGAAGATGCTTATCTATGAATACATACCAAACAAAAGCCTTGATCACTTTCTATTTGATCCTGTAAAGCAAAGAGAGTTAGATTGGTCAAGACGCTACAAGATTATAGTTGGCATTTCTCGAGGAATGCTTTATCTCCATGAAGATTCCCAGCTTAGAATTATACACCGTGATCTCAAAGCTAGCAATGTTCTATTAGATGAAAATATGATCCCAAAGATTTCAGATTTTGGCATGGCAAAGATTTTTGAGGCAGATCAGACTCAAGTAAATACAGGAAGGATAGTTGGGACTTTTGGTTACATGTCTCCAGAATACGCGATGCGTGGACAATTCTCTGTCAAATCAGATGTGTTTAGCTTCGGTGTTCTAGTTTTGGAGATTGTGAGTGGGAAGAAGAACACTGATTTTTATCAATCAAATCAAGCTGATGACCTCTTAAGCTTTGCTTGGAAAAATTGGACAGAGAAAACACCTTTAGAGTTGCTAGATCCATCTCTAAGAGGTTCTTATTCAAGAAACGAAGTCATTAGGTGCATCCATATTGGTTTATTGTGTGTTCAGGAGAATCCCCATGACCGGCCTTCGATGGCTACCATTGCGCTTATGTTGAACAGTTATTCAGTGACCTTGTCGTTGCCTCGACAGCCAGCATCTTTCCTCCATGGAAGAACACCCAACAGGCTAAAACACGGGCTTGATTCTGATCAGTCCAACTCATGTTCAATTCCTTGGTCTGTGAATGAAGCATCCTTCACTGGAGTATATCCCCGATAA 1971 0.4678 MHHFKSSAISMFMLLSFATSEAAPVYSAVACTDDQFATYYQPNTTFQTNLNLLLSSLVSNATLHDGFYRTNISIGTPNEVKGLFLCRGDVTPSACHDCVSAASVNITRRCTNQTESIIWYDECMLRYTNSSTLNNIVPGTSLMSVQAVPDSDRSGFSDFLASMLNEAAQEAVDSSSGKKFATREANFSSSMKLYTLAQCTPDLSSSDCNTCLRSAISAIPSCCDGKRGARNLLPGCNIRYELYPFYNVSAISTQPQSPSSSSGKSNVAVIVAIVVPIVVVFALFVLGWYFLRKRASRKLNTYIRDSIREDLNDVDCLQFDFATVEAATNSFSDENKIGQGGFGVVYKGILPNGMEIAVKRLSVTSLQGAVEFRTEATLVAKLQHRNLTRLLGFCLEGREKMLIYEYIPNKSLDHFLFDPVKQRELDWSRRYKIIVGISRGMLYLHEDSQLRIIHRDLKASNVLLDENMIPKISDFGMAKIFEADQTQVNTGRIVGTFGYMSPEYAMRGQFSVKSDVFSFGVLVLEIVSGKKNTDFYQSNQADDLLSFAWKNWTEKTPLELLDPSLRGSYSRNEVIRCIHIGLLCVQENPHDRPSMATIALMLNSYSVTLSLPRQPASFLHGRTPNRLKHGLDSDQSNSCSIPWSVNEASFTGVYPR* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0473 656 Gene3D - 28 131 IPR038408 -
Lja5g0473 656 Gene3D - 141 245 IPR038408 -
Lja5g0473 656 ProSiteProfiles Protein kinase domain profile. 331 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0473 656 CDD STKc_IRAK 337 603 - -
Lja5g0473 656 SMART serkin_6 331 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0473 656 SUPERFAMILY Protein kinase-like (PK-like) 317 622 IPR011009 -
Lja5g0473 656 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 11 655 - -
Lja5g0473 656 Gene3D Transferase(Phosphotransferase) domain 1 407 611 - -
Lja5g0473 656 Pfam Protein tyrosine and serine/threonine kinase 334 599 IPR001245 GO:0004672|GO:0006468
Lja5g0473 656 ProSiteProfiles Gnk2-homologous domain profile. 28 132 IPR002902 -
Lja5g0473 656 ProSiteProfiles Gnk2-homologous domain profile. 138 245 IPR002902 -
Lja5g0473 656 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 11 655 - -
Lja5g0473 656 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Lja5g0473 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Lja5g0473 656 Gene3D Phosphorylase Kinase; domain 1 294 406 - -
Lja5g0473 656 Pfam Salt stress response/antifungal 152 243 IPR002902 -
Lja5g0473 656 Pfam Salt stress response/antifungal 31 129 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0473 Lja-Chr5 4159667 4162763 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0473 4 656 Receptor kinase-like Gene Family AT4G05200 49.263 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja5g0473 PK_Tyr_Ser-Thr 3.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0473 - - gmx:113000776 995.342