Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0472 ATGCAGATCACTCCAAATTATGATTCTGATATGGAGAAGTTCAGAATTTTGAAGCTGGGAGCTAGTCAACTATGCCTCTATCCTATTAGGAAAGCACAACTGGATGGGGAAATGCGCTTCAACATCATCAAGGGTATTGCTCGAGTCCTTCTTTACCTTCATGAAGATTCTCGACTGCGCATAATACATCGTGATCTAAAAGCAAGCAATATTCTCTTAGATGAAGAGATGAATCCTAAGATAGCAGATTTTGGAATGGCAAGATTGTTTGTTGTGGATCAAACACAAGGCAATACAAATAGAATTGTTGGAACCTATGGATATATGGCACCAGAGTATGCAATGCATGGACAGTTTTCAGTGAAATCAGATGTCTTCAGTTTTGGAGTTCTGGTTCTTGAAATTGCATGGAGAAACTGGAGGGAGGGGACAGCTACAAATGTTATAGATCCATCATTAAACCGAATTTCACCAGATGAAATCATAAGGTGCATCCACATCGGTTTACTCTGTGTTCAAGAAAATTTAGCTGATAGACCAACCATGGCTTCTGTTGCACTCATGCTTAATAGCTATTCTCTTTCTCTCCCAGTACCTTCCAAACCTGCATTTTTCATGGACAATACAACTGGAAGCCTTCTAGCCATGCAGTTGGCCTCCAAAATGTCGGGACCGGCCCTGATGGTGTGGTACTTGAACCGCTCAATATTTCGACTCGTGGAAACTCAACCTACATATTGGTTGGTCTACGAAAGAAATGTAACTGGGCAGGTGAATGAGTTCAATCAACTACTGAGTAACTTGATGAAAAATCTGAAAGACAAAGCTGCATCAGGTGACTCTCGTCGCAAGTACGCCACTGATAACGTCGTGATCTCAAATTTTACAACCGTGTATGGCTATGTGCAGTGTATGGCTGATTTGACAGGGGTTCAATGCAATGACTGCTTGGAACAAGCTATCTCTGACATCCCAAGTTGTTGTGATGGCAAGATAGGGGGAAATGTTCTTAAACCCAGTTGTCGTCTTAGATTTGATCCCTACCGCTTCTACAATCAAACCACCATAATAGACCCTGTTCAACCTCCTTCATCGTTCACCAATAACACTTCTTCACAAGCAACAAAGCAAGAACTGTCATCGATCGCCATAACAGTGCCAGTTGTTATTATTGTTCTGGTGGTGCTCAGTTTTATTTGCATCTGTTCAATACTCAGAAAGCGAAGAATTATGTTTCCATATGAAATCACTATTGCTGAGTCATTGAAATTCAATTTTGACACCATACGAGTTGCTACTAATGACTTCTCTGATTCTAATAAACTTGGAGAAGGCGGATTTGGAGCTGTTTACTGGGGTGAGTTATCGAATGGGCAAGTTATTGCTGTCAAAAGGTTATCATGGAATTCTAACCAAGGAGATACAGAATTTAAAAATGAAGTGCTTTTAGTGGCCAAACTTCAACACCGCAATTTAGTTAGGCTACTTGGTTTCAGTATGGAAGGGAGAGAAAGACTACTTGTCTATGAATTTGTTCCTAATAAAAGCCTTGACTACTTCATATTTGATCCTATCAGGAAAGCGCAACTGGTTGGTGAAATGCGCTATAACATCATTAGGGGTATTGCTCGAGGCCTTCTTTACCTGCATGAAGATTCTCGACTGCGCATAATTCACCGTGATCTAAAAGCAAGCAATATTCTCTTGGATGAAGAGATGAATCCTAAGATAGCAGATTTTGGCATGGCAAGATTGTTTGTTATGGATCAAACTCAAGAAAATACAAGTAGAATCGTCGGAACCTATGGATATATGGCGCCTGAGTATGCAATGCATGGACATTTTTCAATGAAATCTGATGTCTTCAGTTTTGGAGTAATAGTCCTTGAAATTGTAAGTGGCCTGAAAAACAATAAGGGCATTAATCATGGTGAGGATGTGGAATATCTACTGAGCTTTGCATGGAGAAACTGGAGGGAGGGGACTGCTACAAAAGTTATAGATCCATCATTAAACAACATTTCACCAAATGAGATGATGAGATGTATCCACATCGGTTTACTCTGTGTTCAAGAAAATTCAGCTAATAGACCAACCATGTCTAACGTTGTACTGATGCTTAATAGTAATTCTGTAACTCTCCCAGTACCTTCAAAACCTGCATTTTTCATGGACAATTCAACTAGAATCCTTACAGACATGCAGTTGTTGGAAGATAACTCACGGGCAACAAGATCAAGTCAATCCACGAGTAAATCAGCTCAAGGATCTGTAAATGACGTTTCAATTACTGAGTTATCCGCTCGCTAG 2310 0.4017 MQITPNYDSDMEKFRILKLGASQLCLYPIRKAQLDGEMRFNIIKGIARVLLYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGMARLFVVDQTQGNTNRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLVLEIAWRNWREGTATNVIDPSLNRISPDEIIRCIHIGLLCVQENLADRPTMASVALMLNSYSLSLPVPSKPAFFMDNTTGSLLAMQLASKMSGPALMVWYLNRSIFRLVETQPTYWLVYERNVTGQVNEFNQLLSNLMKNLKDKAASGDSRRKYATDNVVISNFTTVYGYVQCMADLTGVQCNDCLEQAISDIPSCCDGKIGGNVLKPSCRLRFDPYRFYNQTTIIDPVQPPSSFTNNTSSQATKQELSSIAITVPVVIIVLVVLSFICICSILRKRRIMFPYEITIAESLKFNFDTIRVATNDFSDSNKLGEGGFGAVYWGELSNGQVIAVKRLSWNSNQGDTEFKNEVLLVAKLQHRNLVRLLGFSMEGRERLLVYEFVPNKSLDYFIFDPIRKAQLVGEMRYNIIRGIARGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGMARLFVMDQTQENTSRIVGTYGYMAPEYAMHGHFSMKSDVFSFGVIVLEIVSGLKNNKGINHGEDVEYLLSFAWRNWREGTATKVIDPSLNNISPNEMMRCIHIGLLCVQENSANRPTMSNVVLMLNSNSVTLPVPSKPAFFMDNSTRILTDMQLLEDNSRATRSSQSTSKSAQGSVNDVSITELSAR* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0472 769 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 134 223 - -
Lja5g0472 769 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 226 751 - -
Lja5g0472 769 MobiDBLite consensus disorder prediction 740 769 - -
Lja5g0472 769 SUPERFAMILY Protein kinase-like (PK-like) 422 737 IPR011009 -
Lja5g0472 769 Gene3D Transferase(Phosphotransferase) domain 1 26 196 - -
Lja5g0472 769 Gene3D Transferase(Phosphotransferase) domain 1 512 714 - -
Lja5g0472 769 ProSitePatterns Serine/Threonine protein kinases active-site signature. 557 569 IPR008271 GO:0004672|GO:0006468
Lja5g0472 769 SMART serkin_6 436 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0472 769 ProSitePatterns Serine/Threonine protein kinases active-site signature. 61 73 IPR008271 GO:0004672|GO:0006468
Lja5g0472 769 ProSiteProfiles Gnk2-homologous domain profile. 242 350 IPR002902 -
Lja5g0472 769 ProSitePatterns Protein kinases ATP-binding region signature. 442 464 IPR017441 GO:0005524
Lja5g0472 769 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 27 135 - -
Lja5g0472 769 CDD STKc_IRAK 442 708 - -
Lja5g0472 769 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 134 223 - -
Lja5g0472 769 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 226 751 - -
Lja5g0472 769 SUPERFAMILY Protein kinase-like (PK-like) 32 215 IPR011009 -
Lja5g0472 769 Gene3D Phosphorylase Kinase; domain 1 403 511 - -
Lja5g0472 769 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 27 135 - -
Lja5g0472 769 Pfam Salt stress response/antifungal 258 346 IPR002902 -
Lja5g0472 769 Pfam Protein kinase domain 37 136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0472 769 Pfam Protein kinase domain 437 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0472 769 Gene3D - 245 350 IPR038408 -
Lja5g0472 769 ProSiteProfiles Protein kinase domain profile. 1 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0472 769 ProSiteProfiles Protein kinase domain profile. 436 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0472 Lja-Chr5 4144905 4159308 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0472 228 769 Receptor kinase-like Gene Family AT4G21410 50.352 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja5g0472 Pkinase 3.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0472 - - gmx:100782800 689.878