Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0471 ATGGCTGCAAATGCAATGCTTTTTAGGCTGCTGCTTTCCTTTCTTTGCTATCTCTTTGTCATAATGGTACCACTGCAAGTTAGTGCCCTGGATCCTTATAACTGTGATAACGGAAGAGGCAACTACACAACCAACAGTGCCTATGACAACAACCTCAACACAGTTTTATCCAGTTTCTTAAATCACACAGAAATCAACTACGGTTACTACAATCTCTCACACGGCCAAAACGCAGACAAAGCTTATGTCCGCGGGTTGTGCAGAGGAGATCTTGAGCCAGATGAGTGCCGAAAACGACTAAATGATTCAGCATTCTATCTCAAAAAGCAGTGTCCAAACCAAAAAGAAGCAATTGTGTGGGCTGGAGACTGCACCGTGTGGTACTCCAACCGCTCAATATTCGGCGTCACGGAAACTCAACCTACTCAATGGTTGATCTACCTCAGGAATATAACTGGGCCGGCGGATGAGTTCGATCAGGTGCTGAGTAACTTGATGAGAAATCTGAAAGACAAAGCTGCATCTGGTGACTCTCGTCGCAAGTACGCCTCCAATAACGTGACCACAGATTATACAACCTTGTATGGGCTTGTACAGTGTATGGCTGATTTGACAGGGGCTCAATGCAATGACTGCTTGGAAAGCGCTATCTCTGAAATCCCAAGTTGTTGTGAGGGCAGGATGGGGGGAAATGTTCTTAAACCCAGTTGTCGTCTTAGATTCGATCCTTACCGCTTCTTCAATGAAACAACCGTAATAGACCCTATTCAGGTTCAACCCCCTTCACCATCCACCAATAACACCACTTCAGAAGGAAAGAGCAACACAGCAAAAATTGTCATCGCCATAACAGTTCCAGTTGTTCTTGTTGCTCTGGTGCTCGGTTTTATTTGCATCTGTTTAATAGTGAGAAAGCAAAAACATTTTGTTGAAATTAAAAGTGGACAAGATCATGATGAAGATGAAATTACTATTGCTCAGTCATTGCAATTCAACTTTGACACCATACGAGTTGCTACAAATGACTTCTCTGATTCTAGTAAACTTGGACAAGGCGGATTTGGAGCCGTTTACAGGGGCGAGCTCTCTAATGGACAAGTTATTGCTGTGAAAAGGTTATCAGGGAATTCTGACCAAGGAGATGCAGAATTTAAGAATGAAGTGCTTTTAGTGGCCAAACTTCAACACCGAAATTTAGTTAGGCTACTTGGCTTCAGTTTGGAAGGGAGAGAAAGGCTACTTGTCTATGAATTTCTTCCCAATAAAAGCCTTGACTACTTCATATTTGATCCTCTTAGGAAAGCACAACTGGATGGGGAAATGCGCTTCAACATCATCAAGGGTATTGCTCGAGGCCTTGTTTACCTTCATGAAGATTCTCGACTGCGCATAATACATCGTGATCTAAAAGCAAGCAATATTCTCTTAGATGAAGAGATGAATCCTAAGATAGCAGATTTTGGAATGGCAAGATTGTTTGTTGTGGATCAAACTCAAGGAAATACAAAGAGAATTGTTGGAACCTATGGATATATGGCACCAGAGTATGCAATGCATGGACATTTTTCAGTGAAATCAGATGTCTTCAGTTTTGGAGTTCTGGTTCTTGAAATTGTAAGTGGCCTAAAAAACAATAATGCCATTCATCAGGGGGAGAATGCGGAGTATCTACTGAGCTTTGCATGGAGAAACTGGAGGGAGGGGACAGCTACAAATGTAATAGATCCATCATTAAACAGCATTTCAGCAGATGAAATCATAAGATGCATCCACATTGGCTTACTCTGTGTTCAAGAAAATTTAGCTGATAGACCAAACATGGCTTCTGTTGCACTCATGCTTAATAGCTATTCTCTTTCTCTCCCAGTACCTTCCAAACCTGCATTTTTCATGGAGAATACAACTGAAAGCCTTCTAGCCATGCAGTTGTCGGAAGATGATTCAAGGGCAACTAGATCAACTGAATCCACGAGTAAATCAGTTCGAGAATCTGTAAACGAGGCTTCAATCACTGAGCTATCCGCTCGCTAG 2031 0.4215 MAANAMLFRLLLSFLCYLFVIMVPLQVSALDPYNCDNGRGNYTTNSAYDNNLNTVLSSFLNHTEINYGYYNLSHGQNADKAYVRGLCRGDLEPDECRKRLNDSAFYLKKQCPNQKEAIVWAGDCTVWYSNRSIFGVTETQPTQWLIYLRNITGPADEFDQVLSNLMRNLKDKAASGDSRRKYASNNVTTDYTTLYGLVQCMADLTGAQCNDCLESAISEIPSCCEGRMGGNVLKPSCRLRFDPYRFFNETTVIDPIQVQPPSPSTNNTTSEGKSNTAKIVIAITVPVVLVALVLGFICICLIVRKQKHFVEIKSGQDHDEDEITIAQSLQFNFDTIRVATNDFSDSSKLGQGGFGAVYRGELSNGQVIAVKRLSGNSDQGDAEFKNEVLLVAKLQHRNLVRLLGFSLEGRERLLVYEFLPNKSLDYFIFDPLRKAQLDGEMRFNIIKGIARGLVYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGMARLFVVDQTQGNTKRIVGTYGYMAPEYAMHGHFSVKSDVFSFGVLVLEIVSGLKNNNAIHQGENAEYLLSFAWRNWREGTATNVIDPSLNSISADEIIRCIHIGLLCVQENLADRPNMASVALMLNSYSLSLPVPSKPAFFMENTTESLLAMQLSEDDSRATRSTESTSKSVRESVNEASITELSAR* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0471 676 CDD STKc_IRAK 349 615 - -
Lja5g0471 676 ProSiteProfiles Gnk2-homologous domain profile. 139 246 IPR002902 -
Lja5g0471 676 Gene3D - 31 132 IPR038408 -
Lja5g0471 676 Gene3D - 146 246 IPR038408 -
Lja5g0471 676 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 658 - -
Lja5g0471 676 Pfam Protein kinase domain 344 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0471 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Lja5g0471 676 ProSiteProfiles Gnk2-homologous domain profile. 30 133 IPR002902 -
Lja5g0471 676 Gene3D Transferase(Phosphotransferase) domain 1 419 621 - -
Lja5g0471 676 SUPERFAMILY Protein kinase-like (PK-like) 329 642 IPR011009 -
Lja5g0471 676 ProSitePatterns Protein kinases ATP-binding region signature. 349 371 IPR017441 GO:0005524
Lja5g0471 676 MobiDBLite consensus disorder prediction 643 676 - -
Lja5g0471 676 MobiDBLite consensus disorder prediction 654 676 - -
Lja5g0471 676 Pfam Salt stress response/antifungal 155 242 IPR002902 -
Lja5g0471 676 Pfam Salt stress response/antifungal 35 130 IPR002902 -
Lja5g0471 676 Gene3D Phosphorylase Kinase; domain 1 305 418 - -
Lja5g0471 676 SMART serkin_6 343 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0471 676 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 12 658 - -
Lja5g0471 676 ProSiteProfiles Protein kinase domain profile. 343 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0471 Lja-Chr5 4139634 4142999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0471 9 647 Receptor kinase-like Gene Family AT4G21410 50.000 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja5g0471 Pkinase 9.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0471 - - gmx:113000777 860.522