Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0468 ATGGATGTGTTTCAGCAGAAGAAGAAATCCACAGGCCGCAAGAAGATTGAGATCAAGAAGCTTGTCAAGGACGCGAATAAGCAAGTCACATTCTCGAAACGTCGCGCAGGCCTATTCAAAAAAGCAAGTGAACTCTGCATTTTATGCAATGTTCAAATGGCCATAATTGTGTATTCCCCTGCTGACAAATTGTTCTCCTTTGGCCACCCCAACACTGAAGCCATCGTCTCACGCTATCTCAACGGATCTACAGAATTTGAGCCTGCAAAGACAAGAGGCAGATCAGGAACATATGAAGAGTACAATCGAGAATACGACGAGGCGATTAAGGTGTTGGAGGCACAGAAGAAGAAACTAGCAGAGATTGAAACTTTGGCTAAGGTTTGGAACAGGGGAGAATGGTGGAATGAATCGATTGATGAGATGGGCGCTGATCAACTTGAGCAATTCATGTTGTCTATTTATGCTTTAAGGGGAAAGCTTGCAGAAAGAGCAGATCAATTCCCGATGATGTTTGCCAGGCTATAG 528 0.4413 MDVFQQKKKSTGRKKIEIKKLVKDANKQVTFSKRRAGLFKKASELCILCNVQMAIIVYSPADKLFSFGHPNTEAIVSRYLNGSTEFEPAKTRGRSGTYEEYNREYDEAIKVLEAQKKKLAEIETLAKVWNRGEWWNESIDEMGADQLEQFMLSIYALRGKLAERADQFPMMFARL* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0468 175 SUPERFAMILY SRF-like 12 83 IPR036879 GO:0003677|GO:0046983
Lja5g0468 175 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Lja5g0468 175 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 167 - -
Lja5g0468 175 CDD MADS_MEF2_like 12 83 IPR033896 GO:0000977|GO:0045944
Lja5g0468 175 Gene3D - 24 108 IPR036879 GO:0003677|GO:0046983
Lja5g0468 175 PANTHER MADS BOX PROTEIN 8 167 - -
Lja5g0468 175 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Lja5g0468 175 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Lja5g0468 175 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Lja5g0468 175 Coils Coil 98 125 - -
Lja5g0468 175 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Lja5g0468 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0468 Lja-Chr5 4127122 4127649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0468 8 168 Type I MADS-box Gene Family AT5G60440 39.053 3.92e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja5g0468 SRF-TF 2.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0468 - - lja:Lj5g3v2063120.1 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0468 5 4127122 4127649 Lja5g0468 5 4127122 4127649 ECH