Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0456 ATGACGGAACCGCCGCCGTCAACCCCACCTCACCCACCACCACCACCCTCAATGTCCCCCTCGCCAGACCACTCCTCCGCCACCAGTATGTTCTGGGGTGAATGGAGGAGCATCATCAACCGCCCATCTCCGCCACCTCTTCCGCCGATTCCCGACGAGGAAACAATCGCCGAACTCATCGCCGCAGAGACCCGCCACATGCCGAGAAGCGATTACTTCCAGCGATGCTGCAACAACTCCGTCGATATCAACAAACGCTTGGACGCCATCACGTGGATCTTGAAGGTTCACGCTTTCTACGAGTTTCGGCCAGTGACGGCGATTCTCTCTGTCAACTACCTTGACCGTTTTCTCTCACGCGCTTCTCTTCCGCGATCGAGTTATGGGTGGGTGTTTCAGCTGCTATCAGTGGCGTGTTTATCTCTTGCGGCGAAAATGGAGGAGCCTCGAGTTCCGTTGTTGATGGACTTGCAATTGTTCGAACCCAGATTCGTTTTCGAACCCAAAACGATTCAGAAAATGGAGGTTTGGATCATGGCTGAACTCAACTGGAGACTCCGTTCTGTTACCCCATTCGATTATCTCGATTATTTCATCGCCAAGCTTCCTTCCTCTTCCTCCTCCTCCTCCTCCGATTCTATCAACCGGTTCGTCTCCACCGCCTCCGATCTCATTATCAGCACCACCCGTGTGGTGGAATTCGCGAGATTCGCACCGTCCACCGTGGCTGCCGCCGCCGTGCTCTGCTCAGCTGGTTACCGCCGTGATGCTGTTTCCGAGTCGCTGCTGTGTTTTCACGACAGAGTAAACCAAGAAATGGTGAGATGCTGTCACCAACTAATGGAGGAGTACATGGTGGACACGTGTCTCGAATCTAGGTACAAAGTGAGGAGACCAGAGCCGGCGCCGCCGTCTAGCCCAATCGGCGTCCTGGACGCCGCTACATGCGCCAGCTGCGACACTCGTTCCGAGACAAACTGCGGTGGTGGTGAGTCGAGTGAGGAGCCGGAACCTTTGCTCCCGATGTACCCGACGATGGTAGATAAGCAAGGAAGTCCCCCAAGTTCCGTCCCAGTCAGTACCATCATATCATAA 1095 0.5507 MTEPPPSTPPHPPPPPSMSPSPDHSSATSMFWGEWRSIINRPSPPPLPPIPDEETIAELIAAETRHMPRSDYFQRCCNNSVDINKRLDAITWILKVHAFYEFRPVTAILSVNYLDRFLSRASLPRSSYGWVFQLLSVACLSLAAKMEEPRVPLLMDLQLFEPRFVFEPKTIQKMEVWIMAELNWRLRSVTPFDYLDYFIAKLPSSSSSSSSDSINRFVSTASDLIISTTRVVEFARFAPSTVAAAAVLCSAGYRRDAVSESLLCFHDRVNQEMVRCCHQLMEEYMVDTCLESRYKVRRPEPAPPSSPIGVLDAATCASCDTRSETNCGGGESSEEPEPLLPMYPTMVDKQGSPPSSVPVSTIIS* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0456 364 Pfam Cyclin, N-terminal domain 56 186 IPR006671 -
Lja5g0456 364 PANTHER CYCLIN-D2-1-LIKE 46 338 - -
Lja5g0456 364 MobiDBLite consensus disorder prediction 323 364 - -
Lja5g0456 364 SMART Cyclin_C_2 189 319 IPR004367 -
Lja5g0456 364 MobiDBLite consensus disorder prediction 1 28 - -
Lja5g0456 364 PANTHER CYCLINS 46 338 IPR039361 -
Lja5g0456 364 SMART cyclin_7 91 180 IPR013763 -
Lja5g0456 364 ProSitePatterns Cyclins signature. 86 117 IPR006671 -
Lja5g0456 364 SUPERFAMILY Cyclin-like 45 186 IPR036915 -
Lja5g0456 364 Gene3D - 69 187 - -
Lja5g0456 364 MobiDBLite consensus disorder prediction 349 364 - -
Lja5g0456 364 MobiDBLite consensus disorder prediction 1 21 - -
Lja5g0456 364 CDD CYCLIN 86 175 IPR013763 -
Lja5g0456 364 Gene3D - 58 279 - -
Lja5g0456 364 Pfam Cyclin, C-terminal domain 189 285 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0456 Lja-Chr5 3986771 3988844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0456 53 252 Core Cell Cycle Gene Families AT5G65420 45.274 1.74e-56 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0456 K18810 - gmx:100798996 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0456 5 3986771 3988844 Lja5g0456 5 3986771 3988844 ECH