Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0445 ATGGAACCTATTCAGTTAATTTCTGAAGAATGGGGTTCTCTTAGTGGACTTTACACAGCTGAGGAAGCTGACTTCATGGCCCAGTTGCTTGGTGGCAACTATTCTGTCACAGACAAGCACTGTGGAAATCCCAGTTTTGGCATGCCAATGCCATCTTCTACCATTTGGCATGGTCATGAATCCACAACACTGACCTTGACAAGCACCAATAGCAATTCATATTTTCCTTCAAATGTCACAAATACTAATTTTCTCAGTTTCTCCCAAGGGAGTACCTCCAGCACTGATAGTGGTAGTTTTCAATGGAATGACAAGTTAACCCAACAGATTACTCAAAGCATTAATGAAGAGTCAGGGAGACAGGTTCTTACTGAGAACAATTTGCAGGCTAAGAGGGAGTATCATGAAATGATGGTTTCTGAACCTGCAGAAGAGGAAAGAAGCAGAAACCTGGAGAACCCAACAAAAAGATTTAGGAACTCAATAGAGGACTTTAAAAACATGAGGAATGCTATGCCCATAAGCAATAATGAAGAGGGTAGAGGAGCATGCCTCCAAAGCAGTTGTTTTTCACAAGTTGACTCTAATGCTTCTTTGGAGTTAGTAAGTGGAGGAGCAACTTCAAGTATGACCCCAAAAGATCCTGAAGCTCCTAAGTTATATGGAAAATCAAGAGCCACTAGTGGTCCTGCCACTGATGCACAAAGCATATATGCAAGAAAGCGAAGAGAAAGAATAAATGAAAGGTTGAAAATACTGCAAAGCCTTGTCCCCAATGGAACTAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTTCAATACGTGAAGTTTTTACAGCTCCAAATTAAGGTTTTGAGCTCGGATGATATGTGGATAAAAATGGAGCAAACTTCTGAAGAATGGAGTTCTCTCAGTGGATTCTACACAGCTGAAGAAGCTGATTTCATGAGCCAGTTGCTTAGTAACTGCTCAGTCCCTGATCACCAATATGAAAATTACAATTTGGAGATTCCACCTGCATCATGGTCTGGCCATGAATCAACAATAATGAGTGTGACAGGCATCAATTGCAGTTCATATGTTCACGCAAATGCCAATAATAGTGAGACTAATTTTTTTGGTTTTTCACAAGGAAGTAGCTCCAATATTACTAATTGTAGCAACATGTTTCCTACTACAAGTGGTGGCAATTGCTGCTTTGATGATCCGGTAGCCAACATTGGCTTCATGTCAATAGGTGATGCCAAATTCAACACATTTAGTGTTCAAGGGAATGAAAACTCTGATGAAGAGGTTATTGGTGACAAGGCTCACAAGCAATGTGAAGAACCAGTTTCTGAACCACCAGAAGAGGATATAACCAGCAATCTTGAAAAGTCAGGAAAAAGATCCAGGAGCGCAATGGAGGTTCAAAAGAACAAGACAAATGTCAAATCTAGGAAGAAAGCAAAATCTGCTTTTACAAGCAACACTGAAGAGGATAGAAATCTTGGTCTTCATGGGCAGAGTTTGAGCAGTTGCTGCTCAGAAGATGATGACTCCAATGAGCTAAATGGTGGAGGGTCTTCAAGCTTGGACCAGAAGGATTCTACAACTATTAAGTTGAAGGGTAAATCAAGATCTGAAAGAGGTTCTGCTACTGACCCACAGAGCATCTATGCAAGAAGAAGAAGAGAAAAAATAAATGAAAGGTTGAAAATCTTACAAAACCTAGTCCCCAATGGAACTAAGGTGGATATCAGCACCATGCTTGAAGAAGCTGTTCAATATGTGAAGTTTTTACAACTCCAAATAAAGCTTCTGAGCTCTGATGATCTCTGGATGTATGCTCCCATTGCTTTCAACGGAATGAACATTGGACTAGACCTCAATCTTTTTCCAACCAAACAACCATAA 1899 0.4049 MEPIQLISEEWGSLSGLYTAEEADFMAQLLGGNYSVTDKHCGNPSFGMPMPSSTIWHGHESTTLTLTSTNSNSYFPSNVTNTNFLSFSQGSTSSTDSGSFQWNDKLTQQITQSINEESGRQVLTENNLQAKREYHEMMVSEPAEEERSRNLENPTKRFRNSIEDFKNMRNAMPISNNEEGRGACLQSSCFSQVDSNASLELVSGGATSSMTPKDPEAPKLYGKSRATSGPATDAQSIYARKRRERINERLKILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKVLSSDDMWIKMEQTSEEWSSLSGFYTAEEADFMSQLLSNCSVPDHQYENYNLEIPPASWSGHESTIMSVTGINCSSYVHANANNSETNFFGFSQGSSSNITNCSNMFPTTSGGNCCFDDPVANIGFMSIGDAKFNTFSVQGNENSDEEVIGDKAHKQCEEPVSEPPEEDITSNLEKSGKRSRSAMEVQKNKTNVKSRKKAKSAFTSNTEEDRNLGLHGQSLSSCCSEDDDSNELNGGGSSSLDQKDSTTIKLKGKSRSERGSATDPQSIYARRRREKINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAFNGMNIGLDLNLFPTKQP* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0445 632 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 279 IPR011598 GO:0046983
Lja5g0445 632 Gene3D - 549 609 IPR036638 GO:0046983
Lja5g0445 632 Gene3D - 232 302 IPR036638 GO:0046983
Lja5g0445 632 PANTHER TRANSCRIPTION FACTOR BHLH54 7 293 - -
Lja5g0445 632 CDD bHLH_AtIND_like 231 293 - -
Lja5g0445 632 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 299 627 - -
Lja5g0445 632 MobiDBLite consensus disorder prediction 203 239 - -
Lja5g0445 632 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 231 297 IPR036638 GO:0046983
Lja5g0445 632 MobiDBLite consensus disorder prediction 441 470 - -
Lja5g0445 632 Pfam Helix-loop-helix DNA-binding domain 556 596 IPR011598 GO:0046983
Lja5g0445 632 Pfam Helix-loop-helix DNA-binding domain 240 280 IPR011598 GO:0046983
Lja5g0445 632 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 546 595 IPR011598 GO:0046983
Lja5g0445 632 CDD bHLH_AtIND_like 547 609 - -
Lja5g0445 632 MobiDBLite consensus disorder prediction 491 531 - -
Lja5g0445 632 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 293 - -
Lja5g0445 632 MobiDBLite consensus disorder prediction 441 552 - -
Lja5g0445 632 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 544 612 IPR036638 GO:0046983
Lja5g0445 632 PANTHER TRANSCRIPTION FACTOR BHLH54 299 627 - -
Lja5g0445 632 SMART finulus 552 601 IPR011598 GO:0046983
Lja5g0445 632 SMART finulus 236 285 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0445 Lja-Chr5 3910160 3917386 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0445 301 626 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 41.160 1.55e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja5g0445 HLH 7.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0445 - - lja:Lj5g3v2099560.1 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0445 5 3910160 3917386 Lja5g0445 5 3910160 3917386 ECH