Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0444 ATGGCTCAGTTGGTTTCTGAAGAATGGGGTTCTCTTAGTGGAATTTACACAGCTGAGGAATCTGACTTCATGGCTCAGTTGCTTGGTGGTAATTATAATTATGCTATCACAGAGAACAGTGATAGTGGAAATACCAGTTTTGGCATGCCACCTACATTTTGGCATGGTCATGAATCCACAACAGTGACGTTGACAGGCACCAATAGCAATTCATATCTTCTCTCCAACAATGATAGTGGTAGCTTTCAATGGAATGACAAGTTAAGCCGACAGACAAATGAAAGCATTGATGAAGAATCAGGTCTAGAAGTTCTTGCTGATAACAACTTGCAGGCTAAGAGGGAGTACGAAATGATGATTTCTGAACCTGCAGAAGAGGAAAGAAGCAGAAACCTGGAGAGCCCAACAAAAAGATTCAGGAACTCCATAGAGGACTTTAAAAACATGAGGAATGCTATGCCTATAAGTATCAATGAAGAGGGTAGAAGAGAAAGCATACAAATCAGTTGTTTTCCACAGGTTGACTCTAATGCTTCTTTGGAGCTAAATGGAGGTGTATCACCAAGTCTGAGCCCAAAGGATCCTGCAGTTGCTAATTTACATGGAAAATCAAGAGCTCCTAGTGGTTTTGCCACTGATGCACAAAGCATATATGCAAGAAAGAGAAGAGAAAGAATAAATGAAAGGTTGAGGATATTGCAAACCCTTATCCCCAATGGAACTAAGGTGGATATCAGCACCATGCTAGAGGAAGCTGTTCAATACGTGAAGTTTTTACAGCACCAAATTAAGGTTATGCTTTAA 804 0.4042 MAQLVSEEWGSLSGIYTAEESDFMAQLLGGNYNYAITENSDSGNTSFGMPPTFWHGHESTTVTLTGTNSNSYLLSNNDSGSFQWNDKLSRQTNESIDEESGLEVLADNNLQAKREYEMMISEPAEEERSRNLESPTKRFRNSIEDFKNMRNAMPISINEEGRRESIQISCFPQVDSNASLELNGGVSPSLSPKDPAVANLHGKSRAPSGFATDAQSIYARKRRERINERLRILQTLIPNGTKVDISTMLEEAVQYVKFLQHQIKVML* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0444 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 210 259 IPR011598 GO:0046983
Lja5g0444 267 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 74 265 - -
Lja5g0444 267 Gene3D - 213 266 IPR036638 GO:0046983
Lja5g0444 267 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 74 265 - -
Lja5g0444 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 214 266 IPR036638 GO:0046983
Lja5g0444 267 Pfam Helix-loop-helix DNA-binding domain 220 260 IPR011598 GO:0046983
Lja5g0444 267 CDD bHLH_AtIND_like 211 266 - -
Lja5g0444 267 SMART finulus 216 265 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0444 Lja-Chr5 3902545 3908332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0444 162 266 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 62.264 3.97e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja5g0444 HLH 2.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0444 - - lja:Lj5g3v2099560.1 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g6060 1 111518526 111519968 Lja5g0444 5 3902545 3908332 PCT