Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0439 ATGAGTTGCAACGGTTGCCGTGTCCTCCGAAAGGGTTGCAGCGGCGATGACTGTATGCTACGACATTGCCTTCGGTGGATAGAAAGCCCCCAAGCCCAAGCTAACGCCACCGTGTTCGTCGCCAAGTTCTTCGGCCGCGCCACCCTCATGTCTTTCCTTTCCTCTGTACCCACTAACCAAAGATCCGCTTTGTTTGAGTCTCTTCTATATGAAGCTGTGGGGCGTGCATTAAATCCAGTGAGCGGAGCAGTGGGGTTGCTGTGGAGTGGGAACTGGCAGCTCTGCCAATCGGGTGTGGAGAAAGTGCTCCAAGGTGGTGGCGCGTTGACTCCACTTCCTCAGTTCTCAGGTGTGGATCATGAGAGCAGTGAAGGCTTTGAATCATTTATTGCAGGTTCTTCTCCTTCAAGGAAGCTGAAGATTAATCATGAAGCAGAATCATCAGGTTTGGTGGTTGGCGGCGGCGGAGGAAGGTGTCACCAAGCGAAGAAACAACGTGTGAGGACACCGTCTGAGGAATCTGAAGGGTCGACGTTGGGAAACAGAGGAGAAGATTGTGGTTCTGACAGTGAAAGGAAACTCCTTCCTCTGTTTTTCTGA 600 0.52 MSCNGCRVLRKGCSGDDCMLRHCLRWIESPQAQANATVFVAKFFGRATLMSFLSSVPTNQRSALFESLLYEAVGRALNPVSGAVGLLWSGNWQLCQSGVEKVLQGGGALTPLPQFSGVDHESSEGFESFIAGSSPSRKLKINHEAESSGLVVGGGGGRCHQAKKQRVRTPSEESEGSTLGNRGEDCGSDSERKLLPLFF* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0439 199 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 153 199 - -
Lja5g0439 199 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 134 - -
Lja5g0439 199 ProSiteProfiles LOB domain profile. 1 108 IPR004883 -
Lja5g0439 199 MobiDBLite consensus disorder prediction 152 191 - -
Lja5g0439 199 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Lja5g0439 199 PANTHER LOB DOMAIN PROTEIN 1 134 - -
Lja5g0439 199 PANTHER LOB DOMAIN PROTEIN 153 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0439 Lja-Chr5 3838550 3839954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0439 1 115 AS2 family AT3G49940 69.565 3.52e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja5g0439 LOB 5.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0439 - - lja:Lj5g3v2099760.1 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0439 5 3838550 3839954 Lja5g0439 5 3838550 3839954 ECH
Lja2g0268 2 2483476 2485050 Lja5g0439 5 3838550 3839954 PCT