Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0437 ATGGGACACTCTAACGTCTGGAACTCTCACCCCAAGACCTACGGTCCTGGTTCTCGCGCTTGCCGCGTGTGTGGGAATCCCCATGCAATCATCAGGAAGTATGGCCTCATGTGCTGCAGGCAGTGCTTCCGCAGCAATGCCAAGGAAATTGGCTTCATCAAGTATCGCTAA 171 0.538 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFIKYR* 57
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0437 56 Pfam Ribosomal protein S14p/S29e 7 56 IPR001209 GO:0003735|GO:0005840|GO:0006412
Lja5g0437 56 PANTHER 40S RIBOSOMAL PROTEIN S29 1 54 - -
Lja5g0437 56 PANTHER 40S RIBOSOMAL PROTEIN S29 1 54 IPR039744 GO:0003735|GO:0008270
Lja5g0437 56 Gene3D 30s Ribosomal Protein S14; Chain N 1 56 IPR043140 -
Lja5g0437 56 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0437 Lja-Chr5 3806857 3808470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0437 1 56 Cytoplasmic Ribosomal Protein Gene Family AT4G33865 89.286 8.25e-34 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0437 K02980 - tcc:18608068 129.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g6063 1 111536228 111536736 Lja5g0437 5 3806857 3808470 PCT