Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0430 ATGGGGGATGCATTGAATGGAGAGCAACACAGGAGTGATGCTGTTGTTGTTTCTCCTAATACGGACCTTTCTTTGTTTGACGGGGACAGAGATTTTGAGCCACATACTGGCATTGAGTTCAAATCTCATGAAGCAGCGTATTCGTTTTACCAGGAATATGCTAAATCTATGGGGTTCACCACTTCGATTAAGAACAGCAGGCGCTCGAAGAAAACAAAAGAGTTCATTGATGCCAAATTTGCTTGCTCCAGATATGGAGTGACACCTGAGTCTGACGGTGGGAGCAACCGTAGATCGAGTGTAAAGAAGACAGATTGCAAAGCTTGCATGCATGTGAAGAGAAAGCCGGACGGAAAGTGGATCATTCATGAATTTATAAAGGAACACAATCATGAACTTCTACCAGCTTTGGCATATCATTTTCGGATTCACCGAAATGTGAAATTAGCTGAAAAGAATAATATGGACATCTTGCACGCGGTCAGCGAACGTACCAGAAAGATGTATGTTGAAATGTCTAGGCAATCTGGTGGCTGTCTAAACATTGAGTCTCTTGTAGGGGATTTAAATGATCAGTTTAAAAAAGGCCAGTATTTGGCTATGGATGAAGGAGATGCCCAAGTTATGCTTGAGTATTTTAAGCACATTCAAAAAGAGAATCCCAACTTCTTCTATTCTATAGACTTGAATGAAGAACAGCGTTTACGAAATATATTCTGGATTGATGCAAAAAGTATCAATGATTATCTCAGCTTTAACGATGTAGTTTCATTTGATACCAGCTACATAAAAAGCAATGAGAAGTTGCCATTTGCTCCTTTTGTTGGAGTGAACCATCACTGTCAACCTATATTGCTTGGATGTGCATTGGTTGCAGATGAGACTAAACCAACATTTTCTTGGGTATTGAAGACATGGCTTAGAGCGATGGGTGGGCAAGCTCCCAAAGTTATAATCACTGATCAAGACAAATCCTTGAAGACAGCAATTGAAGAAGTGCTCCCGAATGTTCGGCATTGCTATTCTCTTTGGCACATACTGGAAAGAATACCTGAAAATCTGTCTTTTGTGATCAAACAGTATAAGAACTTCTTGCCAAAGTTTCACAAGTGCATTTTTAGGTCATGGACAGATGAACAGTTTGAAATGAGATGGTGGAAAATTGTCACTAGATTTGAGCTTCGTGATGATATATGGTTTCAATCATTGTATGAAGACCGGAAAAACTGGGTGCCAACTTACATGGGGGACACTTTTTTAGCTGGAATGTCTACACCTCAACGTTCTGAAAGTATGAACTCTTTCTTTGACAAATATATTCATAAGAAAATCACCCTTAAAGAGTTTGTGAAGCAATACGGGGTAATTCTTCATAGTAGGTATGATGAGGAAGCCATTGCAGATTTTGATACATTGCACAAGCAGCCTGCACTCAAATCTCCTTCACCTTGGGAAAAACAAATGTCAACAGTTTATACACATGCAATATTCAAGAAATTCCAAGTTGAAGTGTTGGGCGTAGCAGGTTGTCAATCTCGGATAGAGGTTGAAGATGGAACCATTGCAAAATTTACAGTTCAGGATTACGAAAAGAATGAAGAGTTTTTAGTAACTTGGAACGAGTTGAGCTCAGAGGTCTCCTGCTTCTGCCGATTGTTTGAATATAAAGGTTTCCTTTGCAGGCATGCATTGAGCGTCCTCCAGCGTTGTGGTTGTTCTAGTGTTCCATCACATTATATCATGAAGAGGTGGACCAAAGATGCCAAAATTAGGGAACCCATGGCAGATAAGACAAGAAGGATACAGAGTAGGGTGCAACGATACAATGACTTGTGTAAACGAGCTGTTGTGTTGAGTGAAGAAGGATCATTATCTGAAGAGAGTTACAATGTTGCTTTTCGTGCACTCGTTGATGCCCTGAAGAACTGTGTTCTTGTGAACAATTGTAACAACAATTGTGCAGAAACTAGCAACAATGCTTTCAGCCTTCGTGAAGCAGAAGAAAATCAGGGTGCTCTTGCTTTGAAACCAAGTAAGAAGAGGAACACAGCTAGAAAAAGAAAGGCACAATTAGAGCAGGATGTTATCCTTGCTGATGCTCAAAATAGCCTGCAGCAAATGGATAATCTAAGCTCGGATGCGATGGCACTCAATGGATATTATGGTAGCCAGCAGAATGTGCAAGGACTGCAGGTACAATTGAACTTAATGGAGCCGCCTCATGAGGGTTACTATGTTAATCAACAAAGCATGCAAGGCCTCGGTCCATTGAGTTCTATGGCACCAAGCCATGATGGTTTTTTTGGAACACAGCATAGCATTCATGGGCTGGGAGGGCAGTTGGAATTTCGTCCAGCAACTAGTTTTGGATATAGCCTTCAGGTTTGTGCATGA 2394 0.4081 MGDALNGEQHRSDAVVVSPNTDLSLFDGDRDFEPHTGIEFKSHEAAYSFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDGGSNRRSSVKKTDCKACMHVKRKPDGKWIIHEFIKEHNHELLPALAYHFRIHRNVKLAEKNNMDILHAVSERTRKMYVEMSRQSGGCLNIESLVGDLNDQFKKGQYLAMDEGDAQVMLEYFKHIQKENPNFFYSIDLNEEQRLRNIFWIDAKSINDYLSFNDVVSFDTSYIKSNEKLPFAPFVGVNHHCQPILLGCALVADETKPTFSWVLKTWLRAMGGQAPKVIITDQDKSLKTAIEEVLPNVRHCYSLWHILERIPENLSFVIKQYKNFLPKFHKCIFRSWTDEQFEMRWWKIVTRFELRDDIWFQSLYEDRKNWVPTYMGDTFLAGMSTPQRSESMNSFFDKYIHKKITLKEFVKQYGVILHSRYDEEAIADFDTLHKQPALKSPSPWEKQMSTVYTHAIFKKFQVEVLGVAGCQSRIEVEDGTIAKFTVQDYEKNEEFLVTWNELSSEVSCFCRLFEYKGFLCRHALSVLQRCGCSSVPSHYIMKRWTKDAKIREPMADKTRRIQSRVQRYNDLCKRAVVLSEEGSLSEESYNVAFRALVDALKNCVLVNNCNNNCAETSNNAFSLREAEENQGALALKPSKKRNTARKRKAQLEQDVILADAQNSLQQMDNLSSDAMALNGYYGSQQNVQGLQVQLNLMEPPHEGYYVNQQSMQGLGPLSSMAPSHDGFFGTQHSIHGLGGQLEFRPATSFGYSLQVCA* 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0430 797 Pfam FAR1 DNA-binding domain 48 135 IPR004330 -
Lja5g0430 797 Pfam SWIM zinc finger 537 570 IPR007527 GO:0008270
Lja5g0430 797 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 14 724 - -
Lja5g0430 797 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 14 724 IPR031052 GO:0006355
Lja5g0430 797 ProSiteProfiles Zinc finger SWIM-type profile. 535 571 IPR007527 GO:0008270
Lja5g0430 797 Pfam MULE transposase domain 255 348 IPR018289 -
Lja5g0430 797 SMART 26again6 546 573 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0430 Lja-Chr5 3767720 3771910 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja5g0430 MULE 1.9e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0430 - - gmx:100805377 1406.35