Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0426 ATGACGAGCGCTTCTGAGCTATTCCACATCAGACGGAATCGATTCGGAGCACGAACTACTGCTCTCGATCTAGCCTTCGATTCCTCCCCTTCAGCTCCACATCACCGCTTTCACGACCCCGACGCCGCCGCAGCAGCAGCTTCCCTCCGTCTCCGCCGCCGCCGCCACCACCCGGAGCGTTATGCAACTGATAGAATTCATGGGGTTGGGAGGCATCGCCGCTCTGCTAGTGCTATACATGATAGAACCGTTGATTCTGCAGAAAATGTCATGAGAGGCACTGATAGATTACCAGATGGTGTGTTACTTGCACGGGCAAGGCTCCTGCAAAGGTTGAGAGGGGAGCCTCTCTCTAGAACCAGGCAATATGGTTCAGATTCAATGGATGAGGATCAAGAAAGTGAATTATCAAGTGATGTTCCAACAGGGGCCTCTCTGGTGACTGACTTGACTTCTCAAATGGAAAGGTCCCAGCTCTTGCTAGACCTAAACAACAAGCCACCTGGACTCACTCAGGAGGATGTGAACTGTTTGCATCTGGAAGTTTTCAGGATCAGTGAGACAGGATTAGAATCCAGGGTGCAGGATTGTTCCATATGCTTGGAGTCTTTCACGGATGGAGATGAGCTGATACGCTTGCCATGTGGACATAAATTTCACTCTGCTTGTCTGGATCCTTGGATTCGCTGTTGTGGAGACTGTCCATACTGCCGGCGATGTATAGTTGTAAATAGTCACCTTGAAGAAAATGAGGCTGAGTAG 762 0.5026 MTSASELFHIRRNRFGARTTALDLAFDSSPSAPHHRFHDPDAAAAAASLRLRRRRHHPERYATDRIHGVGRHRRSASAIHDRTVDSAENVMRGTDRLPDGVLLARARLLQRLRGEPLSRTRQYGSDSMDEDQESELSSDVPTGASLVTDLTSQMERSQLLLDLNNKPPGLTQEDVNCLHLEVFRISETGLESRVQDCSICLESFTDGDELIRLPCGHKFHSACLDPWIRCCGDCPYCRRCIVVNSHLEENEAE* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0426 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 242 IPR013083 -
Lja5g0426 253 CDD RING-H2_PA-TM-RING 196 238 - -
Lja5g0426 253 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 1 243 - -
Lja5g0426 253 ProSiteProfiles Zinc finger RING-type profile. 197 238 IPR001841 -
Lja5g0426 253 SUPERFAMILY RING/U-box 196 244 - -
Lja5g0426 253 PANTHER SI:CH211-59O9.10 1 243 - -
Lja5g0426 253 MobiDBLite consensus disorder prediction 117 143 - -
Lja5g0426 253 Pfam Ring finger domain 196 238 IPR001841 -
Lja5g0426 253 SMART ring_2 197 237 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0426 Lja-Chr5 3753575 3756174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0426 1 242 C3H Transcription Factor Family AT1G49850 40.698 1.08e-43 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0426 - - gmx:548042 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0426 5 3753575 3756174 Lja5g0426 5 3753575 3756174 ECH