Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0425 ATGCTTCGCTTGTGCTTCCGCCCTCTCGATTGTATCTTCCGACGGTCACGTGACGGCCTTCTCTGGCACACCGACCTCAAGCCTCACGCCTCCGGCGACTTCTCCATCGCCGTTGCTCAAGCCAATTCCAGCCTCGAGGATCAGAGCCAGGTTTTTACCTCCCCCTCCGCCACCTACGTCGGCGTCTACGACGGCCACGGTGGCCCCCAAGCTTCTCGATTCGTCAACAACCATCTCTTCCCTTATTTGCACAAATTTGCCACTGAGCAAGGGGGGTTGTCAGTGGATGTGATCAAAAAGGCGTTTAGTGCTACAGAGGAGGAGTTTTTGCATTTGGTGAAGCTCTCTTTGCCTGTTAGTCCACAGATTGCTTCAGCTGGATCGTGTTGTCTTCTCGGTGCTATTTCTAATAATCTGTTGTATATTGCCAACCTTGGAGACTCTAGAGTTGTTCTTGGCAGGAGAGGTACCGAGAGAAGGAACTCTCCGGTGGTTGCCGTGCGCTTGTCAACGGATCATAATGTGGCTGATGAAGAGGTGAGGAGAGAAGTTGAAGCTCTCCACCCTGATGATTCACATATTGTTGTTTATACCCGAGGAGTTTGGAGAATTAAGGGCATCATACAGGTGTCAAGATCTATTGGTGATGTGTATTTAAAGAAACCTGATTTCTACAGAGACCCTATTTTCCAGCAATTTGCAAATCCTATTCCTTTGAAGCGTCCTGTGATAACAGCTGAACCATCAATCATTATTAGGGAGCTAGAGTCAGAAGATTTGTTCTTGATATTTGCTTCAGATGGCCTTTGGGAACAATTAAGTGATGAAGCAGCTGTTGAGATGGTTTTCAAATATCCAAGAGCTGTGAGTGTCTTTTGTTCCTTGTGA 888 0.4752 MLRLCFRPLDCIFRRSRDGLLWHTDLKPHASGDFSIAVAQANSSLEDQSQVFTSPSATYVGVYDGHGGPQASRFVNNHLFPYLHKFATEQGGLSVDVIKKAFSATEEEFLHLVKLSLPVSPQIASAGSCCLLGAISNNLLYIANLGDSRVVLGRRGTERRNSPVVAVRLSTDHNVADEEVRREVEALHPDDSHIVVYTRGVWRIKGIIQVSRSIGDVYLKKPDFYRDPIFQQFANPIPLKRPVITAEPSIIIRELESEDLFLIFASDGLWEQLSDEAAVEMVFKYPRAVSVFCSL* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0425 295 Gene3D - 24 291 IPR036457 -
Lja5g0425 295 PANTHER PROTEIN PHOSPHATASE 2C 63-RELATED 4 288 - -
Lja5g0425 295 SMART PP2C_4 27 294 IPR001932 -
Lja5g0425 295 ProSitePatterns PPM-type phosphatase domain signature. 59 67 IPR000222 GO:0043169
Lja5g0425 295 Pfam Protein phosphatase 2C 54 282 IPR001932 -
Lja5g0425 295 ProSiteProfiles PPM-type phosphatase domain profile. 33 295 IPR001932 -
Lja5g0425 295 PANTHER ALPHABET, ISOFORM E-RELATED 4 288 - -
Lja5g0425 295 SUPERFAMILY PP2C-like 41 284 IPR036457 -
Lja5g0425 295 CDD PP2Cc 38 291 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0425 Lja-Chr5 3747363 3750549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0425 17 287 PP2C-type Phosphatase Gene Family AT3G51370 54.480 6.44e-112 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0425 - K01102 gmx:100812137 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0425 5 3747363 3750549 Lja5g0425 5 3747363 3750549 ECH
Lja2g0284 2 2602609 2605093 Lja5g0425 5 3747363 3750549 PCT