Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0417 ATGATTAGTTCAACTGGAGAATTGACAAGCCATAACAACAGTAGCATTGAGCACATGGAAACTGAGCAACCTGAATTGTCTGAAAAAACACCTCAGATAGGCTCTGAATGTCTGGACGGTGAACAAAGGGTGCTTGGTACTGTGTCAACCAGTTCTGTTAATAATGAAAATTCAAATCAAGTTTCTGCCAATGTGACCGAGAATTCTGTTTTTCAACTACCAGCAACACCTCAACATTGCTTAGAAAAGAGTGGTCAGACTGTAACAAGTCCACCCCTGGAAGAAAGCACCTTGAAACAAGTTGCTACTAATGTATCTAATGGTAAATCAGAAAACAAATGTCAGACATCCTCTCAAGATGTTCAAAACGAACTTGTGGAAGCAAGTGATGTAATAACTGGCTCTTTTGTTGCGGACCAAACACAATCCATTCCTGCTCAAGTGAATACGAGTTCTGTGAATGAACTATTGGATATTCCTTCCGGAGATGTTGCAGTAGAAGTTGGTTCTGATAGTTTAGAAAAAAAGTCTAAAGGGTGCTTGGTAGACAGCGAACAAAGGGTACTTGGTACTGTGTTAACCAATTCTATTAATGATGGAAATTCAAATCAAGTTTCTGCCAATGTGACCGAGAATTCTGTTATTCAACTGCCAGCACCACCTCAACATTGCTTTGAAAAGAGTGGACAGACTGTAAAAAGTTCATCTCTGGAAGAAAGTACCTTAAAACAAGTCTCCACTAATTTATCTAACAGTAAATCAGAAAACATATGTCAGACATCCTCTCAAGATGTTCAAAACGAACTTGTGGAAACAAGTGATGCAGTAACTGGCTCTGTTGTTGCAGACAAAACACAATCCATTCCTGCTCAAGTGAATACAAGTTCTGTGAATGAACTATTGGATATTCCTTCCAGAGATGTTGCAGAAGAAGTTGGTTCTGATAGTTCAGAAAGGAAGTCTAAAAGCACAACTCCTTCACAATTGAGACATATAGGTAAAAGTAACTCAAAGTTATCGAAAAAGAAGTATATCCTAAGGTCGTTAGGAAGCAGTGACAGAGCTTTGCGGTCCAGGACAAAAGAAAAACCTAAAGCGCCTGAACCAAGTAGTAACTCAGTTGACGTTAATAATGATGGAGTGAAGAAGGAAAAAAGGAGGAAGAAGAAAAAAACAGGAGGGGAGGAAAAGAAGGATCAATTTTATAAAATCAAAGCTCACCTAAGATATTTATTAAACAGAGTAAGCTATGAGCAAAACTTAATTGATGCTTACTCTGGTGACGGCTGGAAAGGATACAGTATGGACAAGTTAAAGCCTGATAAGGAGATTCAACGGGCTAAATCTGAAATTCTTCGACGTAAATTGAAAATTAGGGATCTATTTCAAAACTTGGATTCCTTGTGTGCTGAAGGAAAGTTTCCAGAATCTTTGTTTGATTCTGAGGGAGAGATTGACAGTGAGGATATATTCTGTTCAATTTGCCAGACCAAAGAGTTGAGCACTGATAATGATATAATTCTCTGTGATGGTGCTTGTGACCGTGGATTTCACCAGCACTGCTTGGATCCTCCATTGTTAACTGAAGACATTCCACCTGGCGATGAGGGTTGGTTATGCCCCGGATGTGATTGCAAAGATGACTGCGTTGACCTTCTTAACGACTCCTTAGGAACACGTCTCTCTCTTAGTGACACCTGGGAGAAGGTTTTTCCTGAAGCAGCAGCTGTTACTGGAAATAATATGGATCAGGGACTTCCTTCTGATGATTCTGATGATGATGATTATAACCCTAATGGTAAAGAGGATGTGGAGGTTGAAGGAGGTGAATCAAGTTCTGATGAATCTGAATATGCTTCTGCTTCTGAGAAATTGGAAGATTCACACCATGAGGATCCATACTTAGGCCTTCCTTCTGAAGATTCAGAGGACAATGATTATGATCCTAGTGCTCCAGATCTTGACAATAAAGTCACAGAAGAAAGTTCAAGCTCTGATTTCACATCTGACTCTGAGGATCTTGCTGCTGCTATTGAGGATAACACGTCCCCTGGACATGTTAAACAGACTAAAAGCAGACAAAAAAGTAAAGTTGGTAAGAACCCATCAATGGTTGATGAAGTGTCATCTTTACGAGAGCCAGAACTTGAGGAAGAGGGTTTCACTCCAGTTTCTGGGAAAAGAAATGTGGAAAGGCTGGACTACAAAAAGCTGTATGATGAGACATACAAAAGTGATACTAGTGAAGATGAAGAATGGACTGCCAGTGCCACTCCAAGTAGAAAAAAGAAACTCTGTGGCAAAATGACTCCAGTGTCATCAGATGGAAAGGCCTCAAATAATTCTAGACATACTCCTGAAAGGAACACCCAACAAGATAAAGTTGAAAATACAAATAATTCACCCACTAAATCACTTGAAGGCTGTCTGGAATCTGGCTCAAGGGATAAAAAGCCTAGGTCTTCAACACGTCAAAGACTTGGAGACGTTGTAGTGCAGAGACTTCACAAATCTTTTAAAGACAATCAGTATCCGGATCGAGCCACAAAAGAAAGCTTGGCAGAAGAACTGGGGCTCACTTTTTTCCAGGTTGACAAATGGTTTGGCAATGCTCGATGGGGCTTTCGGCGTTCATCGCGTATGGGAGCTAGTCCAGGCGAATATGCTTCGCCACAGGCCACTGGCAGCGGACCTGAAAATACTGGGGAGAGGGAACGCGAATTAGCTTCCCAGGAAGTCGGTGAAGAAAAATTGAAAACCCCCAGTCCTAGAAAAAGGAAGCATTTGTCTGAACCGCAGGCATCTGAAGCACCGCAGATTATTGTTCTTGGCTTAGCAGCATCTCCTGGCTCACCACGGGCTCATGCAGGCAATAAAAAGAAGACAGTGAAAAGGAAATGA 2901 0.4109 MISSTGELTSHNNSSIEHMETEQPELSEKTPQIGSECLDGEQRVLGTVSTSSVNNENSNQVSANVTENSVFQLPATPQHCLEKSGQTVTSPPLEESTLKQVATNVSNGKSENKCQTSSQDVQNELVEASDVITGSFVADQTQSIPAQVNTSSVNELLDIPSGDVAVEVGSDSLEKKSKGCLVDSEQRVLGTVLTNSINDGNSNQVSANVTENSVIQLPAPPQHCFEKSGQTVKSSSLEESTLKQVSTNLSNSKSENICQTSSQDVQNELVETSDAVTGSVVADKTQSIPAQVNTSSVNELLDIPSRDVAEEVGSDSSERKSKSTTPSQLRHIGKSNSKLSKKKYILRSLGSSDRALRSRTKEKPKAPEPSSNSVDVNNDGVKKEKRRKKKKTGGEEKKDQFYKIKAHLRYLLNRVSYEQNLIDAYSGDGWKGYSMDKLKPDKEIQRAKSEILRRKLKIRDLFQNLDSLCAEGKFPESLFDSEGEIDSEDIFCSICQTKELSTDNDIILCDGACDRGFHQHCLDPPLLTEDIPPGDEGWLCPGCDCKDDCVDLLNDSLGTRLSLSDTWEKVFPEAAAVTGNNMDQGLPSDDSDDDDYNPNGKEDVEVEGGESSSDESEYASASEKLEDSHHEDPYLGLPSEDSEDNDYDPSAPDLDNKVTEESSSSDFTSDSEDLAAAIEDNTSPGHVKQTKSRQKSKVGKNPSMVDEVSSLREPELEEEGFTPVSGKRNVERLDYKKLYDETYKSDTSEDEEWTASATPSRKKKLCGKMTPVSSDGKASNNSRHTPERNTQQDKVENTNNSPTKSLEGCLESGSRDKKPRSSTRQRLGDVVVQRLHKSFKDNQYPDRATKESLAEELGLTFFQVDKWFGNARWGFRRSSRMGASPGEYASPQATGSGPENTGERERELASQEVGEEKLKTPSPRKRKHLSEPQASEAPQIIVLGLAASPGSPRAHAGNKKKTVKRK* 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0417 966 MobiDBLite consensus disorder prediction 575 830 - -
Lja5g0417 966 MobiDBLite consensus disorder prediction 354 368 - -
Lja5g0417 966 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 484 540 IPR013083 -
Lja5g0417 966 MobiDBLite consensus disorder prediction 319 334 - -
Lja5g0417 966 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 274 921 - -
Lja5g0417 966 CDD homeodomain 823 879 IPR001356 GO:0003677
Lja5g0417 966 SMART HOX_1 820 882 IPR001356 GO:0003677
Lja5g0417 966 SMART PHD_3 491 544 IPR001965 -
Lja5g0417 966 MobiDBLite consensus disorder prediction 299 337 - -
Lja5g0417 966 MobiDBLite consensus disorder prediction 304 318 - -
Lja5g0417 966 Gene3D - 820 885 - -
Lja5g0417 966 ProSiteProfiles 'Homeobox' domain profile. 818 878 IPR001356 GO:0003677
Lja5g0417 966 MobiDBLite consensus disorder prediction 900 932 - -
Lja5g0417 966 SUPERFAMILY Homeodomain-like 817 881 IPR009057 -
Lja5g0417 966 MobiDBLite consensus disorder prediction 773 808 - -
Lja5g0417 966 CDD PHD_PRHA_like 491 543 IPR045876 -
Lja5g0417 966 Pfam Homeodomain 823 873 IPR001356 GO:0003677
Lja5g0417 966 MobiDBLite consensus disorder prediction 656 671 - -
Lja5g0417 966 MobiDBLite consensus disorder prediction 710 758 - -
Lja5g0417 966 ProSitePatterns Zinc finger PHD-type signature. 492 543 IPR019786 -
Lja5g0417 966 MobiDBLite consensus disorder prediction 1 66 - -
Lja5g0417 966 MobiDBLite consensus disorder prediction 350 397 - -
Lja5g0417 966 MobiDBLite consensus disorder prediction 1 30 - -
Lja5g0417 966 ProSiteProfiles Zinc finger PHD-type profile. 489 546 IPR019787 -
Lja5g0417 966 PANTHER HOMEOBOX PROTEIN HAT3.1 274 921 - -
Lja5g0417 966 MobiDBLite consensus disorder prediction 876 966 - -
Lja5g0417 966 Pfam PHD-finger 491 546 IPR019787 -
Lja5g0417 966 SUPERFAMILY FYVE/PHD zinc finger 481 549 IPR011011 -
Lja5g0417 966 MobiDBLite consensus disorder prediction 810 830 - -
Lja5g0417 966 MobiDBLite consensus disorder prediction 44 66 - -
Lja5g0417 966 MobiDBLite consensus disorder prediction 617 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0417 Lja-Chr5 3692651 3700735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0417 349 873 Homeobox Transcription Factor Family AT3G19510 45.878 1.66e-131 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Lja5g0417 Homeodomain 2.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0417 - - lja:Lj5g3v2112070.1 1858.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0417 5 3692651 3700735 Lja5g0417 5 3692651 3700735 ECH