Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0415 ATGATGATCAAGGAAAATGAAACAATTGTTACAACAAACAAGGAACAAGCTAGTGAAGGGATGAGCACAGATAGCAACAATGATGGAAGAGAAGATGATAATCCAGAAGAGTGGTTGAACCTGAGCTTAGGAGGAGGAAGTTCACTCTCAACAGAAGGAGATGCTGAATCACAATCAAGACCACCACCACCACCTACTGCCAAAGTTTTTTCATGCAACTTCTGCAGGAGGAAGTTCTTCAGTTCACAAGCATTAGGAGGTCATCAGAATGCTCACAAAAGGGAAAGAGGTGCTGCCAGGAGATATCAATCTCAGAGGACGATGGCGCTAATGGGCTTGCCCATGAACACTCCCATGCTTCGAACACTTGGTGTCCAGCCCCATTCACTCGTGCACAAGCCATGCAGAGGTGGAACTGTGGTGGCACCAAGCTTTCATGAAGCATATGCAGCAGCAGGGATTGGAATGCCGTGTACACCTTTCGCGGCCGAGGATCAAACGGATCTGGTGTGGCCAGGGAGCTTTCGTATGGTTCTACAACAGCCCGAGCCACCACAGGAGCCACTCAAGCTTGATTTAGACCTCAGACTCTGA 594 0.4848 MMIKENETIVTTNKEQASEGMSTDSNNDGREDDNPEEWLNLSLGGGSSLSTEGDAESQSRPPPPPTAKVFSCNFCRRKFFSSQALGGHQNAHKRERGAARRYQSQRTMALMGLPMNTPMLRTLGVQPHSLVHKPCRGGTVVAPSFHEAYAAAGIGMPCTPFAAEDQTDLVWPGSFRMVLQQPEPPQEPLKLDLDLRL* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0415 197 MobiDBLite consensus disorder prediction 1 24 - -
Lja5g0415 197 PANTHER ZINC FINGER PROTEIN 4-LIKE 5 197 - -
Lja5g0415 197 MobiDBLite consensus disorder prediction 1 68 - -
Lja5g0415 197 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Lja5g0415 197 Gene3D Classic Zinc Finger 57 112 - -
Lja5g0415 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 97 IPR013087 -
Lja5g0415 197 MobiDBLite consensus disorder prediction 41 57 - -
Lja5g0415 197 PANTHER ZINC FINGER PROTEIN 4-LIKE 5 197 - -
Lja5g0415 197 SUPERFAMILY beta-beta-alpha zinc fingers 67 96 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0415 Lja-Chr5 3686042 3687379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0415 17 185 C2H2 Transcription Factor Family AT1G24625 37.427 1.45e-23 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0415 - - gmx:100811125 266.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0415 5 3686042 3687379 Lja5g0415 5 3686042 3687379 ECH