Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0411 ATGGCTGCCAAGGAGGAATTTGAAGTGGACCATGTGACCACACCCATCACTCCAGGGACCAGTTTCTCTCAGCTACTATTCGGAGATGACGATGATGTTGTTCATGATGAGAAAGCATTTGCTTTTGGTACAGTGGACCAGACGTTCAACAACAACAACAACAACAACCTCTCCACCAATTCCAGTCTTTTCTCCATTCACAACACCCCCAAAATGCTCTGCTTTGGCAACAACTATCAAAATGAAGGGGACCTCATGAACAATGTAACCCCTCAGAAATCATCCATCATCACTTCAAGTGACAACAATTCTTCATCTGCTTCTAATTCCTGCAACACCAGCTTCAATTATTCCTTACCTATGTCCAATAGCTTGCAGAAAAAGCGGAATGGGTCGGGACAGGAACCGGGGACCACGGCAAACGTTGGACGCCAGAAACCTCCGTATAAGAAAACCAAAGCAGAGAACCCCACTTCCACCGGACATGCAAAGAAGAGGAAGGAGAAGCTAGGGGAACGAATTGCAGCACTACAGCAACTTGTTTCTCCCTTTGGCAAGACAGATACAGCTTCAGTGCTTCACGAGGCCACTGGTTATATAAAATTTCTACAAGATCAAGTTCAGGTTCTGTGCTCCCCTTATCTGCAACGCTTGCCTTCTTGTTCACAACCTGGGGACGGAGATAACGATGGAGGAGAGGAAGAAGCAGAGAAGCTGAACCTCAGGAGCAGGGGACTCTGCTTGATCCCTGTGTCCTGCACCGTACACGTGGCAAGCACCAACGGTGCTGATTTCTGGTCACCTGGGAACAATGTGAAGCAGTGA 825 0.4776 MAAKEEFEVDHVTTPITPGTSFSQLLFGDDDDVVHDEKAFAFGTVDQTFNNNNNNNLSTNSSLFSIHNTPKMLCFGNNYQNEGDLMNNVTPQKSSIITSSDNNSSSASNSCNTSFNYSLPMSNSLQKKRNGSGQEPGTTANVGRQKPPYKKTKAENPTSTGHAKKRKEKLGERIAALQQLVSPFGKTDTASVLHEATGYIKFLQDQVQVLCSPYLQRLPSCSQPGDGDNDGGEEEAEKLNLRSRGLCLIPVSCTVHVASTNGADFWSPGNNVKQ* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0411 274 Gene3D - 162 218 IPR036638 GO:0046983
Lja5g0411 274 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 56 260 - -
Lja5g0411 274 SMART finulus 160 209 IPR011598 GO:0046983
Lja5g0411 274 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983
Lja5g0411 274 MobiDBLite consensus disorder prediction 122 168 - -
Lja5g0411 274 MobiDBLite consensus disorder prediction 122 141 - -
Lja5g0411 274 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 216 IPR036638 GO:0046983
Lja5g0411 274 PANTHER OS01G0105700 PROTEIN 56 260 - -
Lja5g0411 274 CDD bHLH_AtbHLH_like 163 210 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0411 Lja-Chr5 3659215 3661353 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0411 163 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 59.434 1.09e-39 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0411 - - gmx:100809317 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0411 5 3659215 3661353 Lja5g0411 5 3659215 3661353 ECH