Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0401 ATGGGTAGCCTTGAAGCAGAAAGAACAACTGTTGGTTGGGCTGCAAGAGACCCTTCAGGGATTCTTTCTCCCTACACCTTCACCCTCAGAAACACTGGCCCTGATGATGTTTACATCAAAGTTCACTACTGTGGAGTTTGCCATACTGATGTCCACCAAGTTAAAAATGATCTTGGCATGTCCAATTATCCCATGGTTCCCGGGCATGAAGTGGTTGGTGAGGTACTTGAGGTTGGCTCCGATGTTACCAGGTTCACAGTGGGTGAAATTGTGGGAGCTGGCCTCCTTGTTGGATGCTGCAAAAAATGCACGGCATGCCAATCTGATATTGAGCAATACTGCAAAAAGAAAATCTGGAATTACAATGATGTTTATGTAGATGGAAAACCAACACAGGGTGGCTTTGCTGAAACCATCATCGTTGAGCAAAAGTTTGTTGTGAAAATTCCAGAAGGGATGGCGCCAGAGCAAGTTGCACCATTGTTGTGTGCTGCTGTGACAGTGTATAGTCCACTTTCACATTTTGGGCTGAAAGAGAGTGGTTTGAGAGGTGGAATTTTGGGGCTTGGAGGAGTGGGACACATGGGGGTGATAATAGCAAAGGCAATGGGTCACCATGTGACTGTGATAAGCTCTTCAGATAGGAAGAAGAAAGAAGCAATTGAGGATCTTGGAGCTGATGCATATCTGGTCAGCTCAGATACCACTAGCATGCAGGAAGCTGCTGATTCACTTGACTACATCATTGACACTGTGCCTGTTGGTCACCCTCTTGAGCCTTATCTTTCATTGCTCAAACTTGATGGCAAATTGATCTTAATGGGTGTGATCAACACCCCTCTGCAATTTATCACACCCATGGTCATGCTAGGGAGGAGGTCAATCACTGGAAGCTTCATTGGGAGCATCAAGGAGACAGAGGAGATGCTAGAGTTCTGGAAAGAGAAGGGTCTGACTTCCATGATTGAAATAGTGAATATGGATTACATTAACAAAGCCTTTGAGAGATTGGAGAAGAATGATGTGAGGTATAGGTTTGTTGTGGATGTCAAAGGCAGCAAGCTAATTGATCAGTGA 1077 0.4494 MGSLEAERTTVGWAARDPSGILSPYTFTLRNTGPDDVYIKVHYCGVCHTDVHQVKNDLGMSNYPMVPGHEVVGEVLEVGSDVTRFTVGEIVGAGLLVGCCKKCTACQSDIEQYCKKKIWNYNDVYVDGKPTQGGFAETIIVEQKFVVKIPEGMAPEQVAPLLCAAVTVYSPLSHFGLKESGLRGGILGLGGVGHMGVIIAKAMGHHVTVISSSDRKKKEAIEDLGADAYLVSSDTTSMQEAADSLDYIIDTVPVGHPLEPYLSLLKLDGKLILMGVINTPLQFITPMVMLGRRSITGSFIGSIKETEEMLEFWKEKGLTSMIEIVNMDYINKAFERLEKNDVRYRFVVDVKGSKLIDQ* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0401 358 CDD CAD1 11 349 - -
Lja5g0401 358 SUPERFAMILY GroES-like 16 181 IPR011032 -
Lja5g0401 358 Gene3D - 164 320 - -
Lja5g0401 358 Pfam Alcohol dehydrogenase GroES-like domain 34 149 IPR013154 -
Lja5g0401 358 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Lja5g0401 358 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 318 IPR036291 -
Lja5g0401 358 Pfam Zinc-binding dehydrogenase 191 312 IPR013149 -
Lja5g0401 358 PANTHER ALDEHYDE REDUCTASE 4 355 - -
Lja5g0401 358 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 4 355 - -
Lja5g0401 358 SMART PKS_ER_names_mod 20 348 IPR020843 GO:0016491
Lja5g0401 358 Gene3D - 13 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0401 Lja-Chr5 3568036 3569819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0401 1 358 Monolignol Biosynthesis Gene Families AT3G19450 77.716 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0401 K00083 - gmx:100804892 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0401 5 3568036 3569819 Lja5g0401 5 3568036 3569819 ECH