Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0396 ATGAGCCATAACTCCCAGAATCTCCATTTTTGGTGGAGGGTTTCATCTTTTCTTCTTCTCCTGCTTCAATCTGTTGCTCTCAACTCTGATGGGGTGCTATTGCTGAAATTCAAGTACTCCATTCTTAGTGACCCATTATCAGTTTTAGAGAGCTGGAACTACGATGATGCAACTCCATGTTCCTGGAATGGAGTTACATGCACTGAAATTCCAACCCCTGGTTCCCCTGATTTGTTCAGAGTGACAAGCTTGGTTCTATCAAAAAACCAGCTTCTTGGTTCCATTGCTGAAGAACTAGGCATGATTCAACACCTTCGTCATCTCGATCTCTCCAACAATCTCCTCAACGGGTCCTTACCCAACTCCATCTTCAACTCTTCTCAGCTTCAAGTGCTCTCTCTCTCAAACAATGTCATCTCAGGAAAGCTACCTGAGCTGGTTGGTAAATTGACAAGCCTTCAAGTTCTCAACCTTTCTGACAATGCCTTTGCAGGGTTGATCCCAGAAAATCTCACTGCTCTACAGAACCTAACTGTTGTTTCTCTGAAGAGTAACTATTTCTCTGGTGGAGTCCCAACCGGGTTCAAATCTGTGGAGATTTTGGATCTCTCCTCCAACTTGCTCAATGATTCTCTGCCAACTGTGTTTGGTGGTGAAACTTTGAGATACTTGAATCTCTCTTACAACAAGATTTCAGGAACAATTCCTCCAGCATTTGCAAAACAGATTCCAGTGAACTCAACAATTGACCTCTCATTCAACAATCTAACAGGACCAATACCAGAATCTCTGGCTTTGCTCAACCAGAAAACTGAGCTGCTATCAGGGAATGCTGATCTATGTGGGAAGCCTTTGAAGATTCTTTGCTCTATTCCCTCTACTATGTCCACTCCTCCACCTAATATCACAAACACATCTTCACCAGCAATTGCAGCCATACCCAAAATTGACACAGACCCATCATCAAACTCCTCAGGTGCTCCTCCAAGTGGTTCTTCTCAGAGTGGCCTAAAACCTTCTACCATAGCAGCCATTGTTGTAGGAGATTTGGCTGGCCTTGCAGTATTAGCTCTCATCATTCTTTTCGTCTACCAACAAAGAAGCAAAAGAAATCCAAACCCAGCCACTTGTGCTACTTCTACAAACTCAGAAAAGAAAGTGGAAACCATTGCAAAACAAGACCCAAATGTGAGAACACCCTTCAATCCATGTTACTGCTTAACAACCAAAGAAGAGGAGACATCAGAAGCAACCACCTCCGACAGCGACCATGAAAACCCCACCGTGGTGGTGTCCACGGCCGCACAAAACGGCAACATTCAGAGAGAAGCCACGCTAGTAACTGTAGACGGCGAGACGAAGCTGGAGCTGGACACGTTGCTGAAGGCTTCAGCGTACATTCTCGGAACCAGCCGTGCCAGCATCGTGTATAGAGCAGTGCTTCAAGATGGGAGAGCCTTTGCTGTGAGAAGAATTGGTGAGTGCGGCATTGAGAGGAAGAAGGACTTTGAGAATCAAGTAAGAGCCATTGCAAAGCTTCGCCACCCGAATTTGGTCAAAGTTCGTGGCTTCTCTTGGGGGGAAGATGAAAAGCTTGTAATATGTGACTATGTTCCCCATGGAAGCCTCGCTAGCATTCTTTACAGAAGAGCTGGTTCATCTCCTCTGAACTTATCCTTTGAGGCACGATTGAAGATAGCAAAGGGGGTTGCAAGAGGCTTGAACTTTATTCATGAGAAGAAGCATGTCCATGGCAATGTGAAACCGAGCAACATTCTGTTAAACTCAGAGATGGAACCCATCATAAGCGATTTTGGGGTGGACCGGCTCCTCTTGAGATCAAACGGTTCGGCCAGGCAGTTAATGGGGGTGAACCAGAGAACCGGACAAGATAACAACATGCTTCAGCTTCCTAATGGTTCTAGCCCCTATGCAACAATGGGACCATCTTCTAGTAGTGGTGGCCAACAAGTGGTTTATCAAGCGCCAGAGTCACTTCAGAACATCAAGCCAAGCCCCAAGTGGGATGTGTATTCATTTGGCATTGTCTTGTTAGAGCTTCTCAGTGGGAGGGGTTTCTCAGACCGGGAGCTGGACCAATGGCCTCACCCCGGTTCGGTTGAAGAGGAGAAGAACCGGGTCTTGAGGATGGCTGACGTGGGCATCAAGGTAGAGATGGAAGGCAGAGAAAGTGTAATATTGGCCTGCTTCAATTTGGGGCTAAGTTGTGCTTCTGTTGTCCCACAAAAGAGACCCTCAATGAAAGAAGCTCTACAAGTCTTAGAGAAGATTAATTCTTCATAA 2304 0.4592 MSHNSQNLHFWWRVSSFLLLLLQSVALNSDGVLLLKFKYSILSDPLSVLESWNYDDATPCSWNGVTCTEIPTPGSPDLFRVTSLVLSKNQLLGSIAEELGMIQHLRHLDLSNNLLNGSLPNSIFNSSQLQVLSLSNNVISGKLPELVGKLTSLQVLNLSDNAFAGLIPENLTALQNLTVVSLKSNYFSGGVPTGFKSVEILDLSSNLLNDSLPTVFGGETLRYLNLSYNKISGTIPPAFAKQIPVNSTIDLSFNNLTGPIPESLALLNQKTELLSGNADLCGKPLKILCSIPSTMSTPPPNITNTSSPAIAAIPKIDTDPSSNSSGAPPSGSSQSGLKPSTIAAIVVGDLAGLAVLALIILFVYQQRSKRNPNPATCATSTNSEKKVETIAKQDPNVRTPFNPCYCLTTKEEETSEATTSDSDHENPTVVVSTAAQNGNIQREATLVTVDGETKLELDTLLKASAYILGTSRASIVYRAVLQDGRAFAVRRIGECGIERKKDFENQVRAIAKLRHPNLVKVRGFSWGEDEKLVICDYVPHGSLASILYRRAGSSPLNLSFEARLKIAKGVARGLNFIHEKKHVHGNVKPSNILLNSEMEPIISDFGVDRLLLRSNGSARQLMGVNQRTGQDNNMLQLPNGSSPYATMGPSSSSGGQQVVYQAPESLQNIKPSPKWDVYSFGIVLLELLSGRGFSDRELDQWPHPGSVEEEKNRVLRMADVGIKVEMEGRESVILACFNLGLSCASVVPQKRPSMKEALQVLEKINSS* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0396 767 Gene3D Ribonuclease Inhibitor 27 195 IPR032675 -
Lja5g0396 767 Pfam Leucine Rich repeats (2 copies) 128 164 IPR025875 -
Lja5g0396 767 Gene3D Ribonuclease Inhibitor 196 291 IPR032675 -
Lja5g0396 767 SMART LRR_typ_2 150 174 IPR003591 -
Lja5g0396 767 SMART LRR_typ_2 195 218 IPR003591 -
Lja5g0396 767 SMART LRR_typ_2 102 126 IPR003591 -
Lja5g0396 767 CDD STKc_IRAK 468 764 - -
Lja5g0396 767 MobiDBLite consensus disorder prediction 370 389 - -
Lja5g0396 767 PANTHER OS04G0122200 PROTEIN 22 765 - -
Lja5g0396 767 Pfam Leucine Rich repeat 220 233 IPR001611 GO:0005515
Lja5g0396 767 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Lja5g0396 767 SUPERFAMILY Protein kinase-like (PK-like) 467 764 IPR011009 -
Lja5g0396 767 CDD TM_EGFR-like 341 371 - -
Lja5g0396 767 MobiDBLite consensus disorder prediction 370 386 - -
Lja5g0396 767 Pfam Protein kinase domain 468 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0396 767 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 22 765 - -
Lja5g0396 767 SUPERFAMILY L domain-like 31 287 - -
Lja5g0396 767 Gene3D Transferase(Phosphotransferase) domain 1 538 767 - -
Lja5g0396 767 Gene3D Phosphorylase Kinase; domain 1 430 537 - -
Lja5g0396 767 ProSiteProfiles Protein kinase domain profile. 462 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0396 767 Pfam Leucine Rich Repeat 104 123 IPR001611 GO:0005515
Lja5g0396 767 ProSiteProfiles Leucine-rich repeat profile. 104 126 IPR001611 GO:0005515
Lja5g0396 767 MobiDBLite consensus disorder prediction 313 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0396 Lja-Chr5 3539982 3543177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0396 26 764 Receptor kinase-like Gene Family AT2G15300 51.117 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja5g0396 Pkinase 9.8e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0396 - - gmx:100820334 1026.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0396 5 3539982 3543177 Lja5g0396 5 3539982 3543177 ECH