Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0383 ATGGCAATCCATCAACATCATCACAACAATGTCATTGACCAGCTAGAACAAAATGAAAATGTTTCTTCTGTCTTGGATGCTCTTTACTGTGATGAAGAAAAATGGGAGGAAGAGGAAGTAGAACAAGTGGTTGGAGAGTTATCTGAAGAAGAAACAAGTGATGTGACAACAAACAATGACCCTAACAACACTTGTTCTCTGTTTCCCCTGCTTTTGTTGGAGCAAGACTTGTTCTGGGAAGATGAAGAACTCAACTCTCTCTTCTCCAAAGAGAAGATCCAACACCAAAACTATTATAATGATGTGAACTCGGACCCTTTTCTCTCTCAGCCTCGTCATGAGGCAGTGAAATGGATGCTTAAAGTCAATGCTCATTATGGATTCTCTGCTCTCACTGCAACACTTGCTGTTACCTACTTTGATAACTTCCTTTTGAGCTTCCATTTTCAAAGTGAGAAGCCATGGATGATCCAGCTTGCTGCTGTTACTTGCATCTCTTTGGCAGCTAAAGTTGAAGAAACCCAAGTGCCACTTCTCTTAGACCTTCAAGTGCAAGATGCTAAGTTTGTGTTTGAGGCAAAGACCATTCTGAAAATGGAGCTTCTGGTTCTGTCCACACTCAAATGGAAGATGCATCCTGTGACTCCACTTTCATTTCTGGATCACATTATCAGAAGGCTTGGATTGAAAACACACCTTCATTGGGAGTTTCTCAGGCGCTGTGAGCATCTTCTTTTGTCTGTGCTTTTAGATTCAAGATTTGTTGGTGTTCTTCCTTCTGTGTTGGCCACTGCAACAATGCTGCATGTTATAGACCAGATTGAGAAGAGTGATGGGGTGGAATACAAAAAGCAGCTTCTGGGTGTTCTCAAAATTAACAAGGGGAAAGTAGATGAATGCTATGATGCCATGCTTGAGCTTACAAATGCCAATGATTATGATGATAACAAGAAGCTTAATAAGCGCAAGTATGAGGAAATAATCCCTGGTAGCCCAAGTGGCGTCATTGATGCCGCATTTAACTCTGATGGTTCCAACGATTCGTGGACAGTGGGGTCATCATTGTTTTCATCCTCAGGCCCAGAGTCTCCTCTGTTCAAGAAAAGCAGAACCCAAATGAAATTGTCACCACTTAACAGGGTCATTGTTGGAATTGTTAGCACTTCACCTTGA 1173 0.4186 MAIHQHHHNNVIDQLEQNENVSSVLDALYCDEEKWEEEEVEQVVGELSEEETSDVTTNNDPNNTCSLFPLLLLEQDLFWEDEELNSLFSKEKIQHQNYYNDVNSDPFLSQPRHEAVKWMLKVNAHYGFSALTATLAVTYFDNFLLSFHFQSEKPWMIQLAAVTCISLAAKVEETQVPLLLDLQVQDAKFVFEAKTILKMELLVLSTLKWKMHPVTPLSFLDHIIRRLGLKTHLHWEFLRRCEHLLLSVLLDSRFVGVLPSVLATATMLHVIDQIEKSDGVEYKKQLLGVLKINKGKVDECYDAMLELTNANDYDDNKKLNKRKYEEIIPGSPSGVIDAAFNSDGSNDSWTVGSSLFSSSGPESPLFKKSRTQMKLSPLNRVIVGIVSTSP* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0383 390 Gene3D - 95 212 - -
Lja5g0383 390 CDD CYCLIN 112 204 IPR013763 -
Lja5g0383 390 SMART Cyclin_C_2 214 333 IPR004367 -
Lja5g0383 390 PANTHER CYCLIN D3.1 PROTEIN 49 361 - -
Lja5g0383 390 SMART cyclin_7 117 205 IPR013763 -
Lja5g0383 390 Pfam Cyclin, N-terminal domain 90 211 IPR006671 -
Lja5g0383 390 PANTHER CYCLINS 49 361 IPR039361 -
Lja5g0383 390 Gene3D - 92 303 - -
Lja5g0383 390 Pfam Cyclin, C-terminal domain 214 325 IPR004367 -
Lja5g0383 390 SUPERFAMILY Cyclin-like 195 309 IPR036915 -
Lja5g0383 390 SUPERFAMILY Cyclin-like 78 212 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0383 Lja-Chr5 3386211 3388611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0383 1 307 Core Cell Cycle Gene Families AT4G34160 54.723 7.13e-110 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0383 K14505 - gmx:547740 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0383 5 3386211 3388611 Lja5g0383 5 3386211 3388611 ECH
Lja1g4133 1 52533623 52535296 Lja5g0383 5 3386211 3388611 ECH
Lja2g0305 2 2781901 2783292 Lja5g0383 5 3386211 3388611 PCT