Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0382 ATGGATTCGGTACCTGCTGATGTGTCTAATTCATCTCCTGCGAAAGTTCCATCTACTTCGCCTCCTGCCAAAGAGACCGGTGGAGAAGCTTCTGCTTCTGTAGCCTCTGGAGAAGATAATTCTGCCGGCGAGGCACCATCTAGGCTATCTCCCACTGGCATATCATCTTGGGCCAAAAACTTGAAAATTTCTCCATCATTTTCCGGCTCCCAAGATGACTCATCAAGTGCAAATGCTGGGAAATCATCTTTCGCACGCTTCACTAGTAATTTGGGATTGCGGTTGTCTCCAAAATCTCCTGCAACAGATGACAGAACCAATGAAACAACATCGCAGTCTAATTTGTTGGGAAATATTACAAAAGGCTTGGTTGACTCTTCGAAGAATGCAGTGAAAGCAGTGCAGGTTAAAGCACGGCATGTTGTTTCTCAGAATAAACGCAGATACCAGGAAGGAGGTTTTGATTTAGATATGACATACATCACAGAAAACATAATTGCAATGGGGTTCCCTGCTGGCGACATGAGCTCTGGTTTTTTTGGTTATTTTGAAGGGTTTTACAGAAATCACATGGAAGAAGTGATTAAGTTTTTTGAGACCCAGCACAAGGGTAAATACAAAGTTTACAATCTTTGTTCTGAGCGGCTGTATGATGCATCATTGTTTGAGGGGAAGGTGGCTAGCTTCCCATTTGATGACCATAATTGCCCACCAATTCAACTCATTATATCTTTTTGTCAAAGTGCTTACTCATGGTTGAAAGAAGACATTGAGAACGTCGTAGTTGTCCATTGTAAGGCTGGAATGGCAAGGACAGGATTGATGATTTCTAGTCTTCTATTATTCTTAAAGTTCTTTCCAACGGCTGAGGAGTCAATGGATTACTATAATCAGAAAAGATGTGTTGATGGAAAAGGACTTGTTCTGCCTAGTCAGATTAGGTATGTCAAATATTTTGAACGGGTCATGACGTACTTTAATGGAGAGAACCCACCTCCCCGCAGGTGCATGCTTAGGGGGTTCCGGCTTCACAGATGTCCATACTGGATCAGGCCTTCGATAACTGTCTCGGATCATAGCGGTGTTTTGTTCTCAACCAAAAAGCATCCAAGGACCAAGGATCTTTTGGCAGAAGATTTTTGGTTTAGTGCACCAAAGAAGGGAGTGATGGTCTTTGCTTTGCCTGGAGAGCCTGGTCTTACAGAGTTGGCTGGTGACTTCAAAATCCATTTTCACGATCGCCAAGGAGATTTTTACTGTTGGTTGAACACAACTATGACAGAAAATAGGAAAATTTTGAACACCAGTGATCTGGATGGCTTCGATAAGAGAAAATTGCCTTCTCCAGGATTCATGGTAGAAGTAGTGCTTGTTGATTATAATGGTAATGTTGTAACTTCCAGACCTGAAACTGTTACAAAGAAATCCGATGAGAGTCCAAGTAACAGTCCTGCCCCAGTTGAAGTGAGCCCTGCTGCACCAAATGCGAGCAAAGAGTCAGAGGGTGCTGAGAAAGATGATGTGTTTTCAGATGGTGAGGCTGAGCATCCTGCTTCTTCAAGAAGTAAGCAAACAAAAGCATCTGAAGCAGTTGAAACAGTTACGAATGCGCCCAGAGAGTCTGAGTCAAACAAAAATTCAGACCAAGTCTCAAATTTAACGCGTGCAACAGAACAAGTTTCTTTGGGAAATAAGATCTCTACGCCAATTCACAGTGCTGGTGAGCCAAAAAGTGATGATGGAAGAACAGTGCCCAGTCTCCCGACGCCCAGCTCGGAAAGTGAGTTTAAGGCCATGGCTGCAGATGCTTCTGTCTTTACGTTCGGAGATGATGAAGACTACGAAAGTGACTGA 1854 0.4331 MDSVPADVSNSSPAKVPSTSPPAKETGGEASASVASGEDNSAGEAPSRLSPTGISSWAKNLKISPSFSGSQDDSSSANAGKSSFARFTSNLGLRLSPKSPATDDRTNETTSQSNLLGNITKGLVDSSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYFEGFYRNHMEEVIKFFETQHKGKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLIISFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESMDYYNQKRCVDGKGLVLPSQIRYVKYFERVMTYFNGENPPPRRCMLRGFRLHRCPYWIRPSITVSDHSGVLFSTKKHPRTKDLLAEDFWFSAPKKGVMVFALPGEPGLTELAGDFKIHFHDRQGDFYCWLNTTMTENRKILNTSDLDGFDKRKLPSPGFMVEVVLVDYNGNVVTSRPETVTKKSDESPSNSPAPVEVSPAAPNASKESEGAEKDDVFSDGEAEHPASSRSKQTKASEAVETVTNAPRESESNKNSDQVSNLTRATEQVSLGNKISTPIHSAGEPKSDDGRTVPSLPTPSSESEFKAMAADASVFTFGDDEDYESD* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0382 617 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 19 617 - -
Lja5g0382 617 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 160 329 IPR029021 -
Lja5g0382 617 MobiDBLite consensus disorder prediction 468 488 - -
Lja5g0382 617 MobiDBLite consensus disorder prediction 94 114 - -
Lja5g0382 617 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 19 617 - -
Lja5g0382 617 SMART PTEN_C2_2 331 459 IPR014020 -
Lja5g0382 617 ProSitePatterns Tyrosine specific protein phosphatases active site. 263 273 IPR016130 GO:0016311|GO:0016791
Lja5g0382 617 MobiDBLite consensus disorder prediction 1 19 - -
Lja5g0382 617 ProSiteProfiles Phosphatase tensin-type domain profile. 147 326 IPR029023 -
Lja5g0382 617 ProSiteProfiles C2 tensin-type domain profile. 333 460 IPR014020 -
Lja5g0382 617 MobiDBLite consensus disorder prediction 523 568 - -
Lja5g0382 617 MobiDBLite consensus disorder prediction 499 522 - -
Lja5g0382 617 Gene3D Protein tyrosine phosphatase superfamily 132 329 IPR029021 -
Lja5g0382 617 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 240 300 IPR000387 GO:0016311|GO:0016791
Lja5g0382 617 MobiDBLite consensus disorder prediction 1 54 - -
Lja5g0382 617 MobiDBLite consensus disorder prediction 33 54 - -
Lja5g0382 617 CDD PTP_PTEN 157 321 IPR045101 GO:0016791
Lja5g0382 617 MobiDBLite consensus disorder prediction 468 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0382 Lja-Chr5 3378155 3384208 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0382 36 617 Protein tyrosine phosphatase (PTP) family AT3G19420 70.420 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0382 K01110 - gmx:100784003 1037.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0382 5 3378155 3384208 Lja5g0382 5 3378155 3384208 ECH
Lja2g0306 2 2786736 2792049 Lja5g0382 5 3378155 3384208 PCT