Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0326 ATGGGTTTGCAAAACCAGTTAAACGACGTTTCGTCTGGTTCAATACCACTCCTCCTACTCGCGCAAATCGCCACCTGCGTCAATTACCTCCGCTCCTTACTCCTCCATCTCCTCCAATCCCTCCGCCTCTCCACCACCACCGCCACCGACCAGATCATCGTCGACGACCACTTCTTCGCCGCCGTCGGATCCGGACTCGCCGGCCTCATCATGCTCTCCGATCAGCTCGCCCTCAACAACCAGTTGTTCTACAACTACACCGACGACGGCGCCGGCGAGCGCCATAACTGCGTTGTGTGTCAGAGGACCTTCAAGGATGGTGACCAGGTTCGCAGGCTTCCCTGCCGCCACACGTTCCATCGCCGCTGCTTCGAAGGGTGGCTCCACCACTACAAGTTTAACTGCCCACTCTGCCGCTACTCGCTCCTCTCCGATGAGCGCGTCGCGCTCACGGAGCAACGCGTCGGTCGGCAACTCGTCTCGTGGTTCTCCCTCCGCTGA 501 0.5988 MGLQNQLNDVSSGSIPLLLLAQIATCVNYLRSLLLHLLQSLRLSTTTATDQIIVDDHFFAAVGSGLAGLIMLSDQLALNNQLFYNYTDDGAGERHNCVVCQRTFKDGDQVRRLPCRHTFHRRCFEGWLHHYKFNCPLCRYSLLSDERVALTEQRVGRQLVSWFSLR* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0326 166 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 164 - -
Lja5g0326 166 SMART ring_2 97 138 IPR001841 -
Lja5g0326 166 SUPERFAMILY RING/U-box 79 145 - -
Lja5g0326 166 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Lja5g0326 166 Pfam Ring finger domain 96 139 IPR001841 -
Lja5g0326 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 144 IPR013083 -
Lja5g0326 166 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA2A 1 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0326 Lja-Chr5 2901814 2902920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0326 1 165 C3H Transcription Factor Family AT1G15100 50.303 2.65e-49 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0326 K16282 - gmx:100803789 233.032