Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0325 ATGAACAACCTTGGAGATGAAACAGAGTTTTGTCAGAGGAAGAGGAAATCTCCAAGCTCTGAAGGTTCCACTTCAAGGAGAAGATTCAGCAGCAACAACAACAATGAAAAAGATGGAGTCTCCACCACATTGAAGCTTTACGACGACCCTTGGAAGATCAAGAAGACGTTGATGGCGAGTGATTTAGGAATCTTGAACAGACTCATGTTGGCTGCAGATTTAGTGAAGAAGCAGATTTTGCCTATGTTGGGTGTTCATCAAGCAAGAGCTGCAGAGACTGAACAAGGTTCCCAAGTTAGAGTTTGGGACGTGGACACAGAATCTATGCACCAATTAGTTCTCAAGCGTTGGTCCTCTTCCAAAAGCTATGTTCTTATTGGAAAGTGGAGCCAAGATTTCGTGAGAAGAAGAGAGTTGAAGAAAGGGGATGAGATTGGATTCTATTGGGACCCTTATAATTGCGCTTTCAATTTTTGTGTTCTTAAACGCGCTAGGTCACTCGGATTAGATCATCTTATGTCACATGACGACACCATTGTCAAGAGAAACTAA 552 0.4239 MNNLGDETEFCQRKRKSPSSEGSTSRRRFSSNNNNEKDGVSTTLKLYDDPWKIKKTLMASDLGILNRLMLAADLVKKQILPMLGVHQARAAETEQGSQVRVWDVDTESMHQLVLKRWSSSKSYVLIGKWSQDFVRRRELKKGDEIGFYWDPYNCAFNFCVLKRARSLGLDHLMSHDDTIVKRN* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0325 183 MobiDBLite consensus disorder prediction 23 41 - -
Lja5g0325 183 MobiDBLite consensus disorder prediction 1 41 - -
Lja5g0325 183 Gene3D - 50 171 IPR015300 -
Lja5g0325 183 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 12 163 - -
Lja5g0325 183 SUPERFAMILY DNA-binding pseudobarrel domain 49 160 IPR015300 -
Lja5g0325 183 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 12 163 - -
Lja5g0325 183 MobiDBLite consensus disorder prediction 8 22 - -
Lja5g0325 183 CDD B3_DNA 51 162 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0325 Lja-Chr5 2859713 2860264 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0325 6 147 RAV Transcription Factor Family AT1G13260 30.070 1.04e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0325 - - pvu:PHAVU_009G204600g 261.922