Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0324 ATGCAAATGCATAACAAGAACGCTTGCTCACCGTCCTCCAACGGCGGTGGATTCCGCACCGCCACCACCGCCGGCTCCTTCGCTTCCATGTACGACTACGAGAAGCTCCCGTCGCTGTCAGGAAACTCCAGCGGCGCTTCGCTTTACCCGTACACCGGCTCTGCTGCTCAGTACGACTCTTGCTTCATCCAGAAGCAGCAGGACATGGTGAATCGCCACAACATGTGCCTCACTCGCCTCCTGGAAACTTCGAAGGAGGTTGAGGCTCTGCAACAAGAGAACGGCCAGCTCCGTGCCGTGAACAACGAGTTGCAGAAGCAGTTGGATCAGATCGTCATTCAGGCCTCGCTGGAGAATCGATTTGGAGGAGTCGGCGGTGGTTGTGGCGGCTCTGCCGGCCAGACGCCGCCGTCGGCGGCGTTTGAGCATCTCGCACATGCGTTCCGTAGCTTCCAAATTGGGGATGGGAAAGAGAACTGCGCTGATTGGAATACCAACAATATCAACAATATGAATGATAAGGAGATGCAGGAGGTTTCAGATCACGCGAGTCCAACGAGCGTGATTGAGAGTAACAATGGTAATGTTGAAGTGGAGAGGTACTCGCTGCCGAAGAGCATCTCTGTTAGGTCTAATGGCTACTTGAAGTTGGCTCAGCCTGTGCCTCCGGCGGCCACCACCAATAATGCTTGCCGCCCCAAGAATGCTACTCGCCCACGCGCCTCCTCCACTCCCTCTGATACTGTTCAAAAGGTGTATGTGCGTGGAGGGAAGAAAGAGGAAGAGCCTCTGGAGATGGTAGTGTATAACCAGGGGATGTTCAAGACTGAGCTGTGCAACAAATGGCAGGAAACTGGTGCATGCCCATATGGAGATCACTGCCAATTTGCTCATGGGATTGGGGAGCTTCGCCCAGTGATCCGCCACCCACGCTATAAAACAGAGGTCTGCAGGATGGTGCTGTCTGGGGTTGTGTGCCCATATGGCCATAGGTGCCATTTCCGCCACGCACTTACTGAACAAGAGAAAGCTGTTTCACAGTCTAAGCCCAGAACAACCAAAATGGAAAGATGA 1074 0.54 MQMHNKNACSPSSNGGGFRTATTAGSFASMYDYEKLPSLSGNSSGASLYPYTGSAAQYDSCFIQKQQDMVNRHNMCLTRLLETSKEVEALQQENGQLRAVNNELQKQLDQIVIQASLENRFGGVGGGCGGSAGQTPPSAAFEHLAHAFRSFQIGDGKENCADWNTNNINNMNDKEMQEVSDHASPTSVIESNNGNVEVERYSLPKSISVRSNGYLKLAQPVPPAATTNNACRPKNATRPRASSTPSDTVQKVYVRGGKKEEEPLEMVVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLSGVVCPYGHRCHFRHALTEQEKAVSQSKPRTTKMER* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0324 357 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 39 350 - -
Lja5g0324 357 MobiDBLite consensus disorder prediction 224 248 - -
Lja5g0324 357 SMART c3hfinal6 311 338 IPR000571 GO:0046872
Lja5g0324 357 SMART c3hfinal6 273 300 IPR000571 GO:0046872
Lja5g0324 357 PANTHER CCCH ZINC FINGER/TIS11-RELATED 39 350 IPR045877 GO:0003729
Lja5g0324 357 SUPERFAMILY CCCH zinc finger 307 341 IPR036855 GO:0046872
Lja5g0324 357 Gene3D - 307 343 - -
Lja5g0324 357 Gene3D - 268 306 - -
Lja5g0324 357 ProSiteProfiles Zinc finger C3H1-type profile. 273 301 IPR000571 GO:0046872
Lja5g0324 357 Coils Coil 80 110 - -
Lja5g0324 357 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 299 IPR000571 GO:0046872
Lja5g0324 357 SUPERFAMILY CCCH zinc finger 270 305 IPR036855 GO:0046872
Lja5g0324 357 ProSiteProfiles Zinc finger C3H1-type profile. 311 339 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0324 62 353 C3H Transcription Factor Family AT1G68200 50.676 2.75e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja5g0324 zf-CCCH 5.2e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0324 K18753 - gmx:100819250 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0324 5 2852078 2854388 Lja5g0324 5 2852078 2854388 ECH