Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0315 ATGCTGCTACCTTTCATTTGCCTCCTTTTTCTTCTCTGCTGCAACTCTCTTGCACCTCTTGTGACTTCTCTCAATGCTGAAGGCTATGTCCTTTTAACATTCAAGCACTCCATCACTGACCCACAAGGCTCTATGAGTAACTGGAACTCTTCTGATGACAACCCATGTTCATGGAATGGGATTACATGCAAGGACCAAACAGTTATGTCAATTAGTATCCCAAATAGGAAACTCTATGGTTCTCTTCCTTCTACTCTAGGATCTCTTCCTCAGCTCCGACATGTCAACTTCAGGAACAACAAGCTCTTTGGAAACTTGCCTCTGCAGCTCTTTCAAGCTCAGGGACTACAAAGTCTAGTGCTTTATGGCAATTCCTTTTCTGGGTCTGTTCCAAATGAGATTCACAAGCTCAGGTACCTTCAAACTCTAGATTTGTCTCAAAATTTCCTTAATGGGTCATTGCCTGCTGAAATTGTGCAGTGTAAGAGACTCAAAACCCTTGTTCTCAGTAGAAACAATTTCACTGGGACTCTGCCAGATGGATTTGGTGCTAATTTGGTTTCTCTTGAAAAACTAGACCTTTCTTTCAATCAATTTAATGGTTCAATTCCTAGTGATATGGGAAATCTGTCAAGACTTCAAGGAACTGTTGATTTGTCTCATAATCATTTTAGTGGTTCAATTCCAGCTAGCCTTGGCAATCTACCTGAGAAGGTTTACATTGATCTTACTTACAATAGTTTAACTGGTCCAGTGCCCCAAAGTGGTGCTTTGATGAATAGAGGACCAACTGCTTTTATTGGTAATCCTGGTCTATGTGGACCTCCTTTGAAGAATCCATGTGGTTCTGATACTGCTGCTGCTAGTTCACCTTCCTCATTTCCATTTCTTCCTCATGACAATCCACCTCAGGATGCTGGTAATGGTTCTAGGATAAGTGAGAAAAATAAAGGGCTAAGTAAGGGTGCTGTGGCTGGCATTGTTGTGGGTGATTTGATTGGAATTTGCCTTTTAGGTTTGCTGTTCTCCTACTTTTACTCAAGGGTTTGTGGTTGTAACCAGAATCAGGAAGAGAGTGGTGTTAAAAGGGAAAGGAAAAGAAGGAAAGAGTGCTTGTGCTTCACAATGGATGAATCTGAGGTGGCCCTATCTGATCATGTTGAGCAAGATGATCTTGTCCCATTAGATAACCAAGTGGACTTTGATTTGGATGAGCTTCTTAAGGCTTCAGCTTTTGTTTTGGGTAAGAGTGGAATAGGGATTATGTACAGGGTGGTGCTTGAAGATGGGGTTGCTTTGGCTGTGAGAAGATTAGGGGAAGGAGGTTCTCAAAGGTTCAAAGAGTTTCAAACAGAAGTAGAAGCTATAGGGAAGTTAAGGCATCCAAATATTGTAACTTTAAGAGCCTATTACTGGTCTGTTGATGAAAAGCTTCTCATATATGACTATATACCTAATGGAAGCCTTGCTACAGCAATTCATGGGAAGGCTGGACTTGTTGCATTTATCCTAATATCTTGGTCCTACCGATTGAAAATCATGAAAGGAACTGCAAAAGGGTTGGCCTATCTGCATGAATTCAGTCCTAAGAAGTATGTCCATGGAGATCTCAAGCCAAGTAACATACTTCTTGGACATAACATGACAGCCCACATTTCCGATTTTGGACTCGGGCGCCTTGCGGATATCGCTGGAGGTTCCCCAACCTTGCAATCCAACCGAGTCGCCACAGAGAAGCTACACGAAAGACAAAACAGCTTGTCCACCGAAGTCGCAACTAACATGTTGGGAAACGGTTATCAGGCACCAGAAGCACTGAAAATGGTGAAGCCATCACAGAAGTGGGATGTTTATTCATACGGTGTGATTCTGTTAGAAATGATCACGGGACGATTACCAGTTGTCCAAGTGGGTATCTCAGAAATGGACCTTGTGCAGTGGATTCAGTTCTGCATTGAGGATAAGAAGCCACTCTCAGACGTATTAGACCCGTACTTGGCTGAAGAAGAAGCAGATAAGGAGGAAGAGGTAATTGCAGTTTTGAAGATTGCTATGGCTTGTGTCAATAGCAGCCCTGAAAAGAGACCTTCAATGAGGCACGTGCTTGATGCTCTTGATAGATTGTCCATTTCCTCTGATTGA 2142 0.4253 MLLPFICLLFLLCCNSLAPLVTSLNAEGYVLLTFKHSITDPQGSMSNWNSSDDNPCSWNGITCKDQTVMSISIPNRKLYGSLPSTLGSLPQLRHVNFRNNKLFGNLPLQLFQAQGLQSLVLYGNSFSGSVPNEIHKLRYLQTLDLSQNFLNGSLPAEIVQCKRLKTLVLSRNNFTGTLPDGFGANLVSLEKLDLSFNQFNGSIPSDMGNLSRLQGTVDLSHNHFSGSIPASLGNLPEKVYIDLTYNSLTGPVPQSGALMNRGPTAFIGNPGLCGPPLKNPCGSDTAAASSPSSFPFLPHDNPPQDAGNGSRISEKNKGLSKGAVAGIVVGDLIGICLLGLLFSYFYSRVCGCNQNQEESGVKRERKRRKECLCFTMDESEVALSDHVEQDDLVPLDNQVDFDLDELLKASAFVLGKSGIGIMYRVVLEDGVALAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIVTLRAYYWSVDEKLLIYDYIPNGSLATAIHGKAGLVAFILISWSYRLKIMKGTAKGLAYLHEFSPKKYVHGDLKPSNILLGHNMTAHISDFGLGRLADIAGGSPTLQSNRVATEKLHERQNSLSTEVATNMLGNGYQAPEALKMVKPSQKWDVYSYGVILLEMITGRLPVVQVGISEMDLVQWIQFCIEDKKPLSDVLDPYLAEEEADKEEEVIAVLKIAMACVNSSPEKRPSMRHVLDALDRLSISSD* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0315 713 SMART serkin_6 413 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0315 713 SMART LRR_typ_2 137 161 IPR003591 -
Lja5g0315 713 SMART LRR_typ_2 186 210 IPR003591 -
Lja5g0315 713 SMART LRR_typ_2 89 113 IPR003591 -
Lja5g0315 713 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 712 - -
Lja5g0315 713 SUPERFAMILY Protein kinase-like (PK-like) 413 705 IPR011009 -
Lja5g0315 713 Gene3D Ribonuclease Inhibitor 184 282 IPR032675 -
Lja5g0315 713 Gene3D Ribonuclease Inhibitor 24 183 IPR032675 -
Lja5g0315 713 Pfam Protein kinase domain 414 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0315 713 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Lja5g0315 713 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 4 712 - -
Lja5g0315 713 MobiDBLite consensus disorder prediction 283 314 - -
Lja5g0315 713 Pfam Leucine rich repeat 163 224 IPR001611 GO:0005515
Lja5g0315 713 SUPERFAMILY L domain-like 26 278 - -
Lja5g0315 713 CDD STKc_IRAK 414 708 - -
Lja5g0315 713 Gene3D Transferase(Phosphotransferase) domain 1 484 712 - -
Lja5g0315 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 532 544 IPR008271 GO:0004672|GO:0006468
Lja5g0315 713 Gene3D Phosphorylase Kinase; domain 1 377 483 - -
Lja5g0315 713 ProSiteProfiles Protein kinase domain profile. 408 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0315 Lja-Chr5 2760940 2764501 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0315 1 713 Receptor kinase-like Gene Family AT2G01210 65.837 0.0 964
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja5g0315 Pkinase 7.5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0315 - - lja:Lj5g3v2179880.2 1372.84