LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja5g0305	ATGGCTTCAAGGTCATATTCCAACTTGTTAGATCTCACTTCATGTGGCTCCCCATCATCTTTTAGTAGAGAGAGGAAAAGGCTTCCTAGAGTGGCAACTGTTGCTGGAGTACTATCTGAACTTGATGATGAGGCCAGCAACAGTGTTGGCTCTGATGCTCCTTCCTCCATCTCTCAAGAGAGGATGATCATTGTTGGTAACCAGCTTCCCATAAAGGCACACAGGAAAGGCAATGGTGAGTGGGAATTCTCATGGGATGAAGACTCACTTCTCTTGCAGCTGAAAGATGGTCTTGGAGATGATGTGGAAACTATCTACATTGGTTGTCTCAAAGAAGAAATTGAGCCAAGTGAGCAAGATGATGTTGCTCAGTACTTGCTTGACACTTTCAAGTGTGTCCCCACTTTCCTCCCTCCTGAGCTTTTCACTAAATTCTACCATGGATTCTGCAAACAACACCTATGGCCTTTGTTTCACTACATGCTTCCCCTGTCACCTGATCTTGGTGGTAGATTTGATAGGTCCCTTTGGCAAGCTTATGTTTCTGTGAACAAGATATTTGCAGATAAAGTGATGGAAGTGATTACCCCTGATGAGGACTATGTTTGGGTCCATGACTACCACTTGATGGTTCTTCCAACTTTTTTGAGGAAAAGATTTAACAGGGTGAGGCTAGGATTCTTCCTCCACAGTCCATTTCCTTCCTCTGAGATATACCGAACCCTTCCTGTTAGGGATGAACTTCTTAGAGCTCTTCTAAATTCAGACCTTATAGGGTTTCATACTTTTGATTATGCAAGACATTTCCTCTCCTGCTGCAGTAGAATGCTTGGGATTTCTTATCAATCGAAGCGCGGCTACATTGGTCTTGAGTACTATGGAAGAACTGTGAGCATTAAGATTCTTCCGGTTGGGATTCACATAGGTCAGCTTCAATCTGTCATGAACCATCCTGAGACAGAAAGCAAGGTTGCTGAGTTACAAAACCAGTTCAAAGGTCAAACTGTGATGCTTGGGGTGGATGACATGGATATCTTCAAAGGAATCAGCTTGAAACTGTTGGCGATGGAACAGTTGCTTTTACAACATGCTGATAAGAGGGGCAATCTTGTTCTGGTCCAAATAGCAAACCCGGCTCGAGGCCGGGGAAAGGATGTCCAAGAAGTGCAGTGCGAAACTTATGCTACTGTGAAAAGGATAAATGATACATTTGGAAGGTCTGGATATACACCAGTGATCTTGATTGATACACCACTTCAAAGCTATGAGAGAATCGCTTATTATGTGATTGCAGAATGTTGTCTTGTTACAGCAGTGAGAGATGGGATGAACCTTATACCTTATGAGTATGTCATTTGTAGACAAGGAAATGAGAAGATAGATGAGATTTTAGGGATAAACCCACTTACTCAAAAGAAAAGCATGCTGGTAGTGTCTGAGTTCATTGGTTGCTCTCCATCATTAAGTGGAGCAATTAGAGTGAATCCATGGAATATTGATGCTGTTGCTGACGCTATGGATTCTGCTCTAAGGGTCCATGAGTCTGAAAAAAAGATGCGGCATGAGAAGCATTATAGGTATGTTAGCACACATGATGTTGCATATTGGGCGCGTAGCTTCTTGCAGGATTTAGGAAGGGCTTGTAGAGATCATCAGAGGAGGAGATGCTGGGGAATTGGCTTTGGTTTAGGCTTTCGAGTAATCGCTTTGGATCCCAACTTTAGAAAGCTATCTGTGGAACATATTGTTTCAGCTTATAAGAGGACCAAGCACAGAGCAATTCTTTTGGATTATGATGGTACTATGGTGCAGCCTGGATCAATCAGCACAACGCCTAATGCTGAAGCTGTTGGCATCTTGAACAGCTTGTGCAAGGACACTAAGAATTGTGTTTTCATCGTAAGTGGTAAGGAGAGAAAGACTATTAATGAATGGTTTTCTTCTTGTGAAAGGCTAGGAATTGCTGCAGAACATGGTTATTTTGTGAGGGCAAATCATAATGCACAATGGGAAGCATGTGTTTCTGTGCCTGATTTTGACTGGAAGCAGATTGCTGAACCAGTTATGCAATTATACATGGAAACAACTGATGGTTCTAACATAGAGGCCAAAGAGAGTGCTCTTGTTTGGAATTATGAGTTTGCAGACCGAGATTTCGGTTCATGCCAGGCTAAGGAGCTTCTTGATCATCTTGAAAGTGTTCTTGCCAATGAGCCTGTTTCTGTTAAAAGTGGTCCTAACTATGTGGAAGTTAAACCTCAGGGTGTGAGTAAAGGGATTGTAGCAGAACGTCTTCTCTTAACAATGCAACAAAAGGGAGTGATTCCAGATTTTGTGTTGTGCATTGGGGATGATAAATCAGATGAGGACATGTTTGGGGTAATAATGAATGCAAGGGCATCACTGTCCCCAGTTGCTGATGTGTTTCCTTGCACTGTTGGTCAGAAACCTAGCAAGGCCAAGTATTACTTGGAAGACACAAGTGAGATTTTCAGAATGTTGCATGGCCTTGCCAATGCTTCTGAGCAAGCTGCTAGAAATTCTTCTCAGTCTTCTCATTAA	2562	0.4254	MASRSYSNLLDLTSCGSPSSFSRERKRLPRVATVAGVLSELDDEASNSVGSDAPSSISQERMIIVGNQLPIKAHRKGNGEWEFSWDEDSLLLQLKDGLGDDVETIYIGCLKEEIEPSEQDDVAQYLLDTFKCVPTFLPPELFTKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYVSVNKIFADKVMEVITPDEDYVWVHDYHLMVLPTFLRKRFNRVRLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGISYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLQSVMNHPETESKVAELQNQFKGQTVMLGVDDMDIFKGISLKLLAMEQLLLQHADKRGNLVLVQIANPARGRGKDVQEVQCETYATVKRINDTFGRSGYTPVILIDTPLQSYERIAYYVIAECCLVTAVRDGMNLIPYEYVICRQGNEKIDEILGINPLTQKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDSALRVHESEKKMRHEKHYRYVSTHDVAYWARSFLQDLGRACRDHQRRRCWGIGFGLGFRVIALDPNFRKLSVEHIVSAYKRTKHRAILLDYDGTMVQPGSISTTPNAEAVGILNSLCKDTKNCVFIVSGKERKTINEWFSSCERLGIAAEHGYFVRANHNAQWEACVSVPDFDWKQIAEPVMQLYMETTDGSNIEAKESALVWNYEFADRDFGSCQAKELLDHLESVLANEPVSVKSGPNYVEVKPQGVSKGIVAERLLLTMQQKGVIPDFVLCIGDDKSDEDMFGVIMNARASLSPVADVFPCTVGQKPSKAKYYLEDTSEIFRMLHGLANASEQAARNSSQSSH*	854

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja5g0305	853	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	844	IPR001830	GO:0003824\|GO:0005992
	Lja5g0305	853	SUPERFAMILY	HAD-like	592	838	IPR036412	-
	Lja5g0305	853	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	61	548	-	-
	Lja5g0305	853	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6	1	844	-	-
	Lja5g0305	853	CDD	GT20_TPS	61	544	IPR001830	GO:0003824\|GO:0005992
	Lja5g0305	853	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	594	796	IPR006379	-
	Lja5g0305	853	CDD	HAD_TPP	593	829	-	-
	Lja5g0305	853	Gene3D	Glycogen Phosphorylase B;	313	529	-	-
	Lja5g0305	853	Pfam	Glycosyltransferase family 20	61	544	IPR001830	GO:0003824\|GO:0005992
	Lja5g0305	853	Gene3D	Glycogen Phosphorylase B;	54	312	-	-
	Lja5g0305	853	Gene3D	-	591	708	IPR023214	-
	Lja5g0305	853	Gene3D	-	717	853	IPR023214	-
	Lja5g0305	853	Pfam	Trehalose-phosphatase	595	828	IPR003337	GO:0003824\|GO:0005992
	Lja5g0305	853	TIGRFAM	T6PP: trehalose-phosphatase	590	837	IPR003337	GO:0003824\|GO:0005992

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja5g0305	Lja-Chr5	2661701	2666362	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja5g0305	1	838	Trehalose Biosynthesis Gene Families	AT4G17770	78.359	0.0	1404

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja5g0305	K16055		-	gmx:100782799	1577.76