Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0302 ATGTCTGACCAAGCTTCATCCTCCAGAGACATAACTGGGGAGGCAAAGGAGAGGAAGAAGGAAGTAGAAGAAAGAAAGGAGAGAAAAGTTCCTTTGCTCAAACTCTTCTCATTCGCTGACCTTCATGATTGTGTCTTGATGGCTGTTGGAACAGTTGGGGCATGTGTCCATGGAGCCTCTGTGCCTGTTTTCTTTATCTTCTTTGGAAAGATCATCAATGTCATAGGCTTGGCTTACCTTTTTCCCAAAGAAACTTCTCACCGAGTTGCCAAGTATTCGTTGGATTTTGTGTATCTAAGTATAGTAATATTGTTTTCATCCTGGGCAGAGGTGGCTTGTTGGATGCATACTGGTGAACGTCAAGCTGCAAAGATGAGGATGGCGTATTTAAGGTCAATGTTGAATCAAGATATAAGTCTTTTTGACACCGAGGCATCAACTGGAGAGGTCATTTCTTCAATTACAAGTGACATTATCATTGTTCAAGATGCATTATCTGAGAAGGTAGGAAACTTTATGCACTACATAAGCCGATTTGTAGCTGGCTTTATCATTGGTTTTGTGAGAGTGTGGCAGATCAGTTCAGTGACACTTGCAATTGTACCTTTGATTGCCCTTGCTGGAGGTATCTACGCATATGTCACCTTTGGACTTGTTGCAAAGGTTCGGAAAGCATATGTAAGGGCTGGTGAAATCGCAGAAGAGGTGATAAGCAATGTGAGAACTGTACAAGCATTTGTAGGAGAAGAAAGAGCAGTGAGATCATACAAGGAAGCTTTGATAAACACACATATAAATGGTCGAAAAGCAGGTTTAGCAAAGGGCTTAGGACTAGGCTCCCTGCATTTTGTCCTTTTTCTATCATGGGCTCTGCTTGTTTGGTTCACTAGCATTGTTGTTCACAAGAAGATCGCCAATGGTGGAGAGGCTTTCACTACCATGCTCAATGTGGTCATCTGTGGCCTGTCACTAGGGCAGGCAGCACCAGATATTTCTGCATTCATCAGAGCAAAAGCTGCAGCTTATCCCATTTTTGAGATGATAGAGAGGAACACAGTGACAAAAATCATCTCAAATGGTAAAAAATTAAGCAACATAGAGGGTCACATCCAGTTTATTGATGTCTGTTTTAGCTACCCATCTCGTCCAAATGTACTCGTCTTCAACAATCTTCATCTTGATATTCCTTCTGGGAAAATTTTAGCCCTTGTGGGAGGAAGTGGTTCTGGAAAGAGCACAGTTATATCTTTGATTGAGCGCTTCTATGAGCCACTCTCTGGTCAGATACAATTGGATGGGAACAATATCAGGGAACTTGATCTTAAATGGTTTAGACAACAAATTGGGCTAGTTAATCAAGAACCTGCACTTTTTGCTACAAGCATCAGGGAGAACATACTGTATGGAAAAGATGATGCCACTCTTGAAGAACTCAATCTTGCTTTAATGCTTTCTGGTGCTCAGTCTTTTATCAACAATCTTCCTGATCGCTTAGATACTCAGGTTGGAGAGAGAGGAATACAATTATCAGGGGGACAGAAGCAAAGGATTGCTATATCTCGTGCTATAGTGAAGAATCCATCAATCCTTTTATTGGATGAAGCAACTAGTGCCTTGGATGCAGAGTCTGAGAAGAGTGTACAGGAGGCTCTTGATCGAGTCATGGTCGGAAGAACTACTGTGATGGTGGCACACAGGCTTTCTACCATTAGGAATGCAGATATCATTGCTGTTGTTCAGGGAGGGAGCATTGTGGAAATTGGAAACCATGAGGAGCTCATTTCCAACCCAAACAGTATATATACATCTCTTGTTCAAACCCAAGTGGCAGCTTTTCAAGGCCAACCTTCTACAGATCCTTGCTTGGAGCAGCCATCAAGCATAACACACTCCGGAGAATTATCCCGTTCAACAAGCATTGGTGGTAGTTTTCGTTCAGATAAAGAATCTATTGGGCGTGTTTGTGCTGATGAAGCAGGAAGCGTTGGAAGGTCAAGGCATGTGTCCTTAACAAGGCTATACACCATGATTGGTCCTGACTGGTTTTATGGGGTTTCTGGAACCTTGGGTGCTTTTATTGCTGGAGCCTTAATGCCTCTATTTGCTCTTGGAATCTCTCATGCTCTTGTATCATATTACATGGACTGGGACACAACACGCCATGAAGTGAAGAAAATTGTTTTCCTCTTCTGTGGTGCAGCAGTTTTAGCTGTCACTGCCTATGTCATTGAACATCTTTCTTTTGGAATCATGGGCGAGCGACTTACCCTTCGTGTCAGAGAAACTATGTTTTCTGCTATTTTGAAGAATGAAATTGGCTGGTTTGATGATACAAACAACTCAAGTTCTATGCTTTCATCGCGTTTAGAGGCCGACGCAACTTTATTAAAAACTATAGTTGTTGATCGTTCCACGATTCTCTTACAGAATGTTGGTTTGGTTGTTACCTCCTTCATCATTGCCTTCATTTTAAACTGGAGGATTACACTTGTTGTATTGACCACATACCCTTTGATCATTAGTGGTCACATCAGTGAGAAACTTTTCATGCAAGGCTTTGGAGGCAACTTGAGCAAAGCATACCTAAAAGCCAACATGTTGGCTGGGGAGGCTGTGAGTAACATACGCACCGTGGCTGCATTTTGCTCTGAAGAAAAGGTCGTTGGACTTTATGCTAATGAGCTTGTTGAGCCTTCGAAACGTTCATTCAAAAGGGGCCAAATTGCTGGCATATTCTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTGTGGTATGGGTCTGTGTTGATGCAAAAGGAGCTTGCTAGCTTCGCATCAATTATCAAGTCATTTATGGTTTTAATTGTAACAGCACTGGCTATGGGGGAGACTTTGGCACTGGCACCAGACCTTTTGAAAGGGAATCAAATGGTTGCATCAGTTTTTGAAGTGATGGATAGAAAGACATTGATAGTGCATGATGTTGGAGAAGAACTAAAGACAGTGGAAGGAACAATTGAGCTTAAAAGAGTCCATTTCAGCTACCCTTCAAGACCAGATGTGTTTATTTTTAACGATTTCAATCTAACAGTGCCTTCAGGAAAGAGTATTGCCTTGGTGGGGCAAAGTGGCTCTGGTAAAAGCACAGTAATCTCCCTTATACTCCGATTTTATGATCCAACATCTGGGAAAGTGATGATCGATGGAAAAGACATCAGGAAAATCAACTTGAAATCTCTGAGGAGACGCATTGGTCTTGTGCAACAAGAACCTGCTCTTTTTGCAACAACAATTCATGAAAACATTCTCTATGGAAAGGAAGGAGCCTCTGATTCAGAAGTAATGGAAGCAGCAAAACTTGCCAATGCTCATAATTTCATCAGTGCTCTTCCAGAGGGCTACTCAACCAAAGTTGGTGAAAGAGGAGTTCAACTATCTGGTGGCCAGAAACAACGAGTAGCTATTGCCAGGGCTGTTTTAAAAAACCCTGAAATCTTGTTGCTGGATGAAGCTACAAGTGCACTGGATGTAGAGTCAGAGCGTGTGGTGCAACAAGCTTTAGATAAATTGATGCAGAACAGAACAACAGTTATGGTGGCACATAGGCTTTCCACAATAAGAAATGCAGATCAAATATCAGTTTTACAGGATGGGAAGATAATTGAGCAAGGCACACATTCAAGTCTTGTAGAGAACACAAATGGAGCATACTTCAAACTAGTCAGCCTTCAACAACAAGATATGCAAGAACAATAA 3750 0.4187 MSDQASSSRDITGEAKERKKEVEERKERKVPLLKLFSFADLHDCVLMAVGTVGACVHGASVPVFFIFFGKIINVIGLAYLFPKETSHRVAKYSLDFVYLSIVILFSSWAEVACWMHTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISSITSDIIIVQDALSEKVGNFMHYISRFVAGFIIGFVRVWQISSVTLAIVPLIALAGGIYAYVTFGLVAKVRKAYVRAGEIAEEVISNVRTVQAFVGEERAVRSYKEALINTHINGRKAGLAKGLGLGSLHFVLFLSWALLVWFTSIVVHKKIANGGEAFTTMLNVVICGLSLGQAAPDISAFIRAKAAAYPIFEMIERNTVTKIISNGKKLSNIEGHIQFIDVCFSYPSRPNVLVFNNLHLDIPSGKILALVGGSGSGKSTVISLIERFYEPLSGQIQLDGNNIRELDLKWFRQQIGLVNQEPALFATSIRENILYGKDDATLEELNLALMLSGAQSFINNLPDRLDTQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVMVAHRLSTIRNADIIAVVQGGSIVEIGNHEELISNPNSIYTSLVQTQVAAFQGQPSTDPCLEQPSSITHSGELSRSTSIGGSFRSDKESIGRVCADEAGSVGRSRHVSLTRLYTMIGPDWFYGVSGTLGAFIAGALMPLFALGISHALVSYYMDWDTTRHEVKKIVFLFCGAAVLAVTAYVIEHLSFGIMGERLTLRVRETMFSAILKNEIGWFDDTNNSSSMLSSRLEADATLLKTIVVDRSTILLQNVGLVVTSFIIAFILNWRITLVVLTTYPLIISGHISEKLFMQGFGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKVVGLYANELVEPSKRSFKRGQIAGIFYGISQFFIFSSYGLALWYGSVLMQKELASFASIIKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKTLIVHDVGEELKTVEGTIELKRVHFSYPSRPDVFIFNDFNLTVPSGKSIALVGQSGSGKSTVISLILRFYDPTSGKVMIDGKDIRKINLKSLRRRIGLVQQEPALFATTIHENILYGKEGASDSEVMEAAKLANAHNFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDKLMQNRTTVMVAHRLSTIRNADQISVLQDGKIIEQGTHSSLVENTNGAYFKLVSLQQQDMQEQ* 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0302 1249 ProSitePatterns ABC transporters family signature. 509 523 IPR017871 GO:0005524
Lja5g0302 1249 SUPERFAMILY ABC transporter transmembrane region 35 341 IPR036640 GO:0005524|GO:0016021
Lja5g0302 1249 Pfam ABC transporter 389 537 IPR003439 GO:0005524
Lja5g0302 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1004 1240 IPR003439 GO:0005524
Lja5g0302 1249 Gene3D - 360 618 IPR027417 -
Lja5g0302 1249 Gene3D - 994 1249 IPR027417 -
Lja5g0302 1249 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 23 1245 IPR039421 -
Lja5g0302 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 370 606 IPR003439 GO:0005524
Lja5g0302 1249 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 23 1245 - -
Lja5g0302 1249 MobiDBLite consensus disorder prediction 1 22 - -
Lja5g0302 1249 SUPERFAMILY ABC transporter transmembrane region 672 985 IPR036640 GO:0005524|GO:0016021
Lja5g0302 1249 Pfam ABC transporter 1023 1171 IPR003439 GO:0005524
Lja5g0302 1249 SMART AAA_5 1031 1217 IPR003593 -
Lja5g0302 1249 SMART AAA_5 397 583 IPR003593 -
Lja5g0302 1249 CDD ABC_MTABC3_MDL1_MDL2 1004 1242 - -
Lja5g0302 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 608 IPR027417 -
Lja5g0302 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 336 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja5g0302 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1242 IPR027417 -
Lja5g0302 1249 MobiDBLite consensus disorder prediction 620 646 - -
Lja5g0302 1249 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 344 - -
Lja5g0302 1249 CDD ABC_MTABC3_MDL1_MDL2 370 608 - -
Lja5g0302 1249 Pfam ABC transporter transmembrane region 48 319 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja5g0302 1249 Pfam ABC transporter transmembrane region 688 957 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja5g0302 1249 ProSitePatterns ABC transporters family signature. 1143 1157 IPR017871 GO:0005524
Lja5g0302 1249 Gene3D ABC transporter type 1, transmembrane domain 34 973 IPR036640 GO:0005524|GO:0016021
Lja5g0302 1249 MobiDBLite consensus disorder prediction 620 645 - -
Lja5g0302 1249 CDD ABC_6TM_Pgp_ABCB1_D2_like 676 989 - -
Lja5g0302 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 687 971 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0302 Lja-Chr5 2643989 2650962 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0302 22 1243 Calmodulin-binding Proteins AT2G36910 50.280 0.0 1199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0302 K05658 - gmx:100819045 2028.45