Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0291 ATGAAGACAGTAGTGTTGTTTGTGGGTGTTTTCTTCCTCCAACTGGTATGTGCCAGCAGCAAGTGTCCACCTACAATCAAGTGCGGTTATCTGGGAAACATCACGTTCCCTTTTACCAGCACTCAACACCCTGACTGCGGCATCTTGGCGATTCATGGCTGCGACGACCATGACCCAACCGCCACAAAAATCATCAAGAACAACGATAAATGGTTTAATATTGCCAAGCTTGAAGACACAGTAATCACTGTTAGAGACAGTGAGCTCATCCTAACCTTGTCACTAAGAAGTTGCGGAATTTTCGACTACAAATCTATATTCAATGTTAGCACGCCTCTAGCTACTTCTCAGCTCGAAAATTCTGTGTTCTTCTTCAAATGCAACGACTCCATCGATCTCCGCCGCTACCACTCTGTTTCTACTAAAAGCGCCATATGTAACTACACTCATCCAGACATCGATGAGAGTGTTGTGGTGGCTGTCTCCGACTCCGATAACACTGAATCCAGACATCTTAAAGGATGTTCAAAGATGGTTCAGCTTCCAATGAGTGATGAGGTGGGTCACAAGCTTGAACCTGGTGACCTTTTTAACTTCGTTTCTGCGGATTTTGCTGTCCAAATTCAAGTGTCTCGGGATTGTTCTGCCTGCCGCCATCGTCATGGAGGCCGCTGCCGGCTTGACAACACCGGCAAATTTTACTGTGACCAAGGGAAATCTACAAAGACCAAACTTATAGTGATAGCAGTTGCATCTGTTGTTGGGGCACTATTAGTATTGATATTCCTCGCTTGGTCCTTTAGAAGACGTTATCTCAGCAAGCAGAACCCCGCTCACCAAATAATTGAGATGTTTTTGAAAAACCATGGTCGCCTTACCGCCATAAGATACAGTTATGCAGAGATAAAGAAAGCGACCAATTCCTTCAAAAACAAATTGGGTAAAGGAGGGTATGGGAGCGTTTACAAAGGGAAGTTACATGATGGAAGTCTTGTGGCAGTTAAAGTATTAAGTGATTCCAAAGGTAATGGTGAAGAATTTATCAATGAAGTTGCTAGCATCAGTGTCACTTCTCATGTTAACATTGTGACTTTATTGGGGTTCTGTCTGGAAGGTTCTAAAAGAGCTTTGATATATGAGTACATGCCTAATGGATCACTTGAGAAGTTCATATATGAAAGCAAAGATCCAACCAAGCTCAATCTTCTATTGAGTTGCAAAGCCATCTACAATATTGCAATTGGTGTTGCACGAGGACTAGAGTACTTGCATCGAGGTTGCAATAGTAGAATCTTGCACTTTGATATAAAACCTCACAATATATTGCTAGATGAGGATTTTTGTCCCAAGATTTCCGATTTTGGCCTAGCAAAAGTATGTGAAACAAAAGAAAGTATTATATCCTTATTGGGTACCAGGGGAACTGCAGGGTACATTGCTCCTGAGTTGTTCTCTAGAAATTTCGGCGGAGTCTCCCATAAATCTGATGTTTACAGCTACGGGATGATGGTTTTAGAAATGGTCGGGGGAAAACAGAATATCAATGTTGAAGAAGCTCAATGCTCAAGTGAAATATACTTTCCACAATGGATTTACAAGCGTCTTGAACTGAAACAAGACCCTGGACTAAGATGCATCAGAAATGAAAATGACAAAGAAATGATTCGAAAGGTGATTATAGTAAGCTTATGGTGCATACAAACCGACCCCTCACATAGACCAGCAATGAGTGAAGTGGTGGATATGTTGGAATCGAGCTTGCAATCCTTGCAAATACCACCAAAACCTTACCTCTCTTCACCTCCCAGATCCCCACCTAGATCATCAGATTTCAACACTCAGACATCTCAGGCTTTCTCTACTTTTGATGGTATTGATAGAATGCAACAATTTTCTGAATTGAACAAAATTTAA 1914 0.4169 MKTVVLFVGVFFLQLVCASSKCPPTIKCGYLGNITFPFTSTQHPDCGILAIHGCDDHDPTATKIIKNNDKWFNIAKLEDTVITVRDSELILTLSLRSCGIFDYKSIFNVSTPLATSQLENSVFFFKCNDSIDLRRYHSVSTKSAICNYTHPDIDESVVVAVSDSDNTESRHLKGCSKMVQLPMSDEVGHKLEPGDLFNFVSADFAVQIQVSRDCSACRHRHGGRCRLDNTGKFYCDQGKSTKTKLIVIAVASVVGALLVLIFLAWSFRRRYLSKQNPAHQIIEMFLKNHGRLTAIRYSYAEIKKATNSFKNKLGKGGYGSVYKGKLHDGSLVAVKVLSDSKGNGEEFINEVASISVTSHVNIVTLLGFCLEGSKRALIYEYMPNGSLEKFIYESKDPTKLNLLLSCKAIYNIAIGVARGLEYLHRGCNSRILHFDIKPHNILLDEDFCPKISDFGLAKVCETKESIISLLGTRGTAGYIAPELFSRNFGGVSHKSDVYSYGMMVLEMVGGKQNINVEEAQCSSEIYFPQWIYKRLELKQDPGLRCIRNENDKEMIRKVIIVSLWCIQTDPSHRPAMSEVVDMLESSLQSLQIPPKPYLSSPPRSPPRSSDFNTQTSQAFSTFDGIDRMQQFSELNKI* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0291 637 ProSiteProfiles Protein kinase domain profile. 307 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0291 637 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Lja5g0291 637 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 28 618 - -
Lja5g0291 637 PANTHER RUST RESISTANCE KINASE LR10-RELATED 28 618 IPR045874 GO:0004672
Lja5g0291 637 Pfam Protein kinase domain 310 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0291 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Lja5g0291 637 Gene3D Transferase(Phosphotransferase) domain 1 382 592 - -
Lja5g0291 637 Pfam Wall-associated receptor kinase C-terminal 157 235 IPR032872 -
Lja5g0291 637 Gene3D Phosphorylase Kinase; domain 1 285 381 - -
Lja5g0291 637 MobiDBLite consensus disorder prediction 594 616 - -
Lja5g0291 637 SUPERFAMILY Protein kinase-like (PK-like) 291 584 IPR011009 -
Lja5g0291 637 SMART serkin_6 307 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0291 Lja-Chr5 2564209 2567196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0291 22 624 Receptor kinase-like Gene Family AT5G38260 38.811 7.39e-128 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja5g0291 Pkinase 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0291 - - lja:Lj5g3v2182510.1 770.385