LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja5g0240	ATGGCTTCGAAGGAAGAGAATCGAATATTCGTTGGAGGGTTGTCTTGGGACGTGACGGAGCGTCAGCTCGAACATGCCTTTGATCGTTACGGCAAAATTCTTGAATGCCAGATCATGATGGAAAGAGATACAGGTCGTCCCCGAGGATTTGGGTTTATCACATTTGCAGACCGTAGAGGAATGGAGGATGCAATCAAGGAAATGCATGGACGGGAAATTGGTGATCGCATCATCTCGGTCAATAAGGCACAGCCCAAGATGGGTGGTGATGATGCAGACCAAGGCTACAGAGGTGGTGGCTACTCATCAGGTGGTAGGGGAAGCTATGGAGCTGGAGATAGGGTTGGACAGGATGACTGTTTCAAATGTGGGCGTCCAGGGCATTGGGCCCGAGATTGTCCTTTGGCAGGAGGTGGTGGTGGCCGCGGCCGTGGTGGCGGTTCACTTTCTTCACGTCCTAGGTTTGGAGGTTCTGGTGGACATGGGGATCGCCTTGGAGGTGAACGTGATCGATACATTGATGACCGTTATGACGGAGGACGTTATGGAGATAGAGATCGTGTTGACAGCCGTGACTACAAATATGGTAGCCGTGATCGCTATGCTAGTGACAGGTATCCTACTAGTGGAGATCGATTTGCTAGTGATCGGTATGGTGGTGGCTCAGATCATTACTCACAAAATGGTTATGGCAAGGAGAGAGGCTATGACCGGTATGGCGGTGCACGAGGAGGTGCTGATAGGTATGGAAGTGGAGTGGCAGCTCGAGATGAAGGAAGGGGCTACAGGGGTAGGCCTGGTCCATATGATCGCCCGAGCAGGGGTGGCCGTCCATCATCATTTGACCGCTACTGA	855	0.5216	MASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEMHGREIGDRIISVNKAQPKMGGDDADQGYRGGGYSSGGRGSYGAGDRVGQDDCFKCGRPGHWARDCPLAGGGGGRGRGGGSLSSRPRFGGSGGHGDRLGGERDRYIDDRYDGGRYGDRDRVDSRDYKYGSRDRYASDRYPTSGDRFASDRYGGGSDHYSQNGYGKERGYDRYGGARGGADRYGSGVAARDEGRGYRGRPGPYDRPSRGGRPSSFDRY*	285

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja5g0240	284	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	7	85	IPR000504	GO:0003723
	Lja5g0240	284	Gene3D	-	116	144	-	-
	Lja5g0240	284	PANTHER	TRANSFORMER-2-RELATED	1	243	-	-
	Lja5g0240	284	SMART	c2hcfinal6	119	135	IPR001878	GO:0003676\|GO:0008270
	Lja5g0240	284	MobiDBLite	consensus disorder prediction	163	206	-	-
	Lja5g0240	284	ProSiteProfiles	Zinc finger CCHC-type profile.	120	134	IPR001878	GO:0003676\|GO:0008270
	Lja5g0240	284	SUPERFAMILY	Retrovirus zinc finger-like domains	104	139	IPR036875	GO:0003676\|GO:0008270
	Lja5g0240	284	SUPERFAMILY	RNA-binding domain, RBD	4	113	IPR035979	GO:0003676
	Lja5g0240	284	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	9	78	IPR000504	GO:0003723
	Lja5g0240	284	SMART	rrm1_1	8	81	IPR000504	GO:0003723
	Lja5g0240	284	Pfam	Zinc knuckle	120	134	IPR001878	GO:0003676\|GO:0008270
	Lja5g0240	284	MobiDBLite	consensus disorder prediction	136	284	-	-
	Lja5g0240	284	Gene3D	-	1	115	IPR012677	-
	Lja5g0240	284	PANTHER	GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE	1	243	-	-
	Lja5g0240	284	MobiDBLite	consensus disorder prediction	83	110	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja5g0240	Lja-Chr5	2126872	2131838	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja5g0240	9	88	C2H2 Transcription Factor Family	AT2G19380	43.750	5.73e-15	72.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja5g0240	-		-	gmx:100776333	364.77