Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0238 ATGAACGTTGCAGGTTCCATCGGTGTTCATGGATGGAGAGACATCAAGAGTCTCACCGTCCAAGTCATCACCGGCCGGTGGTTTGTGGTGTTCGGCTCCTTCCTAATCATGGCGGCTGCCGGAGCCACCTACATGTTCGGCTTCTACTCCAGCGAGATCAAAACAACACTCGGCTATGACCAATCCACTCTCAACCTCCTCAGTTTCTTCAAAGACGTAGGTAGCAACGTTGGTGTCCTCTCAGGCCTAATCAACGAGCTCACACCACCTTGGGTGGTGCTAGCAATCGGTGCAGTACTCAATTTTGTAGGGTACTTCATGATTTGGCTCTCAGTCACAAAGAAAATTGCAAGACCTCAAGTTTGGCAAATGTGTCTCTACATCTTCATAGGTGCAAATTCTCAATCTTTTGCCAACACCGGTTCCTTAGTCACTTGTGTCAAGAACTTCCCTGAAAGCCGTGGCGTTGTGTTGGGAATCCTCAAAGGCTATTTGGGACTCAGTGGTGCAATCATCTCACAACTCTACTCTGCAATTTACTATGATGACACAAGAGCTTTGATTTTGCTCATAGGTTGGCTTCCTGGTGCAATCTCCTTTATTTTTCTGAGAACCATTCGAATCATTAAGCCTGTGAGGCAGAGTAATGAGCTCAAGGTTTTCTACAATTTCTTGTATATTTCACTTGGTCTTGCTGGGTTTCTTCTGGTCATGATTGTGATTCAGAAAAGTGTGGATTTTACTAGGAGTGAGTATGGTGTTAGTGCTGCTATGGTAGTTTTCTTGATGATTCTTCCACTTCTTGTTGTTTGTATTGAAGAGCACAAGACCTGGCAAAGTAAGAAGCTTCTTGCTTTGGCTGATCCCACATCGGTGAAAGTAGTAACCGAGGGTGAAAATTTCAGCCAGAGTGAAGCTACTAACACTAACAACTCTGTTTCAGCACCAAAGGTAGATTCTGTTTCCAAAGAAACAGGGGACTCTGTTTCCAATAAAACAGGGGACTCTGTTTTCAAAACAGAAGACTCTACTAAATGGTGGCAAAATGTGTTTACTCCACCACACAGAGGTGAAGACTATACAATTCTTCAAGCTCTTTTCAGCATTGACATGTTAATACTATTCATAGCTTGCATTTGTGGTGTTGGTGGAACTTTGACTGCAATTGACAATCTAGGTCAGATTGGAACTGCTCTGAGGTACCCCAAGAAGAGCATAAGCACTTTTGTGTCACTAGTGAGCATTTGGAATTATCTAGGTCGTGTGTTCTCTGGATTTGTCTCTGAACACATTCTCATAAAGTACAAATTCCCACGTCCACTTGTGCTTACTTTAACCCTGCTTTTATCTTGTGTGGGACATATTCTCATAGCTTTTGATGTGCCAAATGGACTCTATGTGGCTTCAGTGATCATTGGGTTTTCTTTTGGGGCACAATGGCCTTTACTTTTTGCCATCATATCTGAACTTTTTGGACTCAAATACTATGCAACTTTGTACAATTTTGGAAGTGCAGCAAGTCCACTTGGGTTGTATGTGCTTAATGTGAAGATCACTGGGCATTTGTATGACAAAGAAGCTAAGAAGCAATTAGCAGCATTGGGGATACATAGAAAAGCTGGGCAGGAATTGAATTGTGTAGGTGTTAATTGCTTCAAGTTATCATTCATAATCATCACAGCTGCAACTTTCTTTGGTGCTGTTATTTCACTCATTTTGGTGGCTAGGACGAGAGCGTTTTACAAAGGTGACATATACAAGAGGTACCGGGAAGAGGCTTTGGTGGCGGAAGCCGAGATGGTTCCGGTGGAGGAGACTGGTGGCAGGACAGGGGAAGATGCCAAAGTTCATCACCGTGTAGTGACAACATCTACTTAG 1878 0.4329 MNVAGSIGVHGWRDIKSLTVQVITGRWFVVFGSFLIMAAAGATYMFGFYSSEIKTTLGYDQSTLNLLSFFKDVGSNVGVLSGLINELTPPWVVLAIGAVLNFVGYFMIWLSVTKKIARPQVWQMCLYIFIGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYLGLSGAIISQLYSAIYYDDTRALILLIGWLPGAISFIFLRTIRIIKPVRQSNELKVFYNFLYISLGLAGFLLVMIVIQKSVDFTRSEYGVSAAMVVFLMILPLLVVCIEEHKTWQSKKLLALADPTSVKVVTEGENFSQSEATNTNNSVSAPKVDSVSKETGDSVSNKTGDSVFKTEDSTKWWQNVFTPPHRGEDYTILQALFSIDMLILFIACICGVGGTLTAIDNLGQIGTALRYPKKSISTFVSLVSIWNYLGRVFSGFVSEHILIKYKFPRPLVLTLTLLLSCVGHILIAFDVPNGLYVASVIIGFSFGAQWPLLFAIISELFGLKYYATLYNFGSAASPLGLYVLNVKITGHLYDKEAKKQLAALGIHRKAGQELNCVGVNCFKLSFIIITAATFFGAVISLILVARTRAFYKGDIYKRYREEALVAEAEMVPVEETGGRTGEDAKVHHRVVTTST* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0238 625 SUPERFAMILY MFS general substrate transporter 356 583 IPR036259 -
Lja5g0238 625 SUPERFAMILY MFS general substrate transporter 27 269 IPR036259 -
Lja5g0238 625 MobiDBLite consensus disorder prediction 303 336 - -
Lja5g0238 625 CDD MFS_Mch1p_like 25 567 - -
Lja5g0238 625 Pfam Nodulin-like 26 270 IPR010658 -
Lja5g0238 625 PANTHER MFS TRANSPORTER 9 320 - -
Lja5g0238 625 Gene3D MFS general substrate transporter like domains 348 581 IPR036259 -
Lja5g0238 625 Gene3D MFS general substrate transporter like domains 21 220 IPR036259 -
Lja5g0238 625 PANTHER MFS TRANSPORTER 334 621 - -
Lja5g0238 625 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 334 621 - -
Lja5g0238 625 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 9 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0238 Lja-Chr5 2107812 2109976 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0238 15 592 Nodulin-like Gene Family AT2G39210 67.820 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0238 - - pvu:PHAVU_007G024800g 948.732