Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0234 ATGCTTCCCATAACCTGCATTCTTTTAATGTTCCTTCTCAGTTCATCTTTCTCTCCCCCAATCATAGCCAAAACTTTCTCCAATCTCACTTTGCCCCACCAACACCCTTACCCTGAAGCTGTTGTTCACCAAGTTCAGAGGGAAATCAATGTCTCACTCACAAGAAGGCAAATGCTCTCAAAGGACCAATCTGCTGCTCCTTCCTGTTTGACAGGAAACCCAGTTGACGATTGCTGGCGGTGCGACACAAACTGGGCAGCAAACCGCCAGAAGCTAGCGGAATGCGGCATAGGATTCGGCCGCGCCGCCATGGGAGGCAAAAACGGCCAGATCTATGTTGTTACAGACTCCTCCGACCGTGACCCGGCGAACCCAGTTCCAGGCACACTCCGCCACGCCGTCATCCAAGACGAGCCACTCTGGATCGTGTTCGCCGCCGACATGACAATCAACCTCCGTCACGAGCTAATCTTCAACAGCTACAAAACCGTCGACGGGCGCGGCGCGAATGTCCAAATCACCGGCCACGGCTGCATCACACTCCAATACATCTCCAACGTGATCATCCACAACATCCATGTCCACCACTGCAAACCCTCCGGGAACACGAACATACGCGCGAGTCCCACACACGTTGGGTGGAGAGGCGTATCGGACGGCGACGGGATCTCCATCTTCGGCGCTCGGAACATCTGGATCGACCATTGCTCGTTGTCGTACTGCGCCGATGGGTTGATTGATGCGATAATGGGATCGACGGCGATAACGATTTCGAACAACCATTTTGCTCACCATGATGAGGTGATGCTGCTTGGGCACAATGATAAGTATACGCCGGATAGGGGAATGCAGGTGACGATTGCGTTCAACCATTTTGGTGCTGGTTTGGTGCAGCGAATGCCAAGGTGTAGGCTCGGTTATATTCATGTGGTGAACAATGATTTCACGCAGTGGGAGATGTATGCCATCGGCGGCAGCGCTAACCCCACCATCAACAGCCAGGGTAACCGTTATACTGCTCCGGCGGATAATAATGCCAAAGAGGTGACAAAGCGCGTGGACACGAATGAAGGCCAGTGGAGTGATTGGAATTGGAAGACGGAGGGGGATATAATGGTAAATGGAGCATTCTTTGTGCCTTCAGGTGCGGGGGCCAGTGCTCAGTATGCAGAAGCCACCAGCTTGCAAGCTAAATCCGCCGTGGCAATCGACCAGCTCACCATGTACTCAGGAGTCTTCGGCGACCCCAGGGATAATGGGGATCTATTCCCCGGTTTCAACGGCGGTGGGACCGTGACCGGAGCCTCTAGCAGAGGCAGCAGTGGTGGGTCCTCCAGCAGTGACGATGGAGACTTCTTTGGGATGATATTCAGAGGCAGCACCAGCAGCCAAGCACCGCCCTCTTCACCCTCGTCATCCATTATAATTGTTTCAACCTTTTTGTCTCTTTTAATTATTTTCATTTTGGATTCTACCACCAACCATGCTATTATTCTATTATCATTACTATGA 1512 0.5231 MLPITCILLMFLLSSSFSPPIIAKTFSNLTLPHQHPYPEAVVHQVQREINVSLTRRQMLSKDQSAAPSCLTGNPVDDCWRCDTNWAANRQKLAECGIGFGRAAMGGKNGQIYVVTDSSDRDPANPVPGTLRHAVIQDEPLWIVFAADMTINLRHELIFNSYKTVDGRGANVQITGHGCITLQYISNVIIHNIHVHHCKPSGNTNIRASPTHVGWRGVSDGDGISIFGARNIWIDHCSLSYCADGLIDAIMGSTAITISNNHFAHHDEVMLLGHNDKYTPDRGMQVTIAFNHFGAGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPADNNAKEVTKRVDTNEGQWSDWNWKTEGDIMVNGAFFVPSGAGASAQYAEATSLQAKSAVAIDQLTMYSGVFGDPRDNGDLFPGFNGGGTVTGASSRGSSGGSSSSDDGDFFGMIFRGSTSSQAPPSSPSSSIIIVSTFLSLLIIFILDSTTNHAIILLSLL* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0234 503 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Lja5g0234 503 PRINTS Pollen allergen Amb family signature 392 415 IPR018082 -
Lja5g0234 503 PRINTS Pollen allergen Amb family signature 119 144 IPR018082 -
Lja5g0234 503 PRINTS Pollen allergen Amb family signature 219 240 IPR018082 -
Lja5g0234 503 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Lja5g0234 503 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
Lja5g0234 503 PRINTS Pollen allergen Amb family signature 155 171 IPR018082 -
Lja5g0234 503 PRINTS Pollen allergen Amb family signature 363 387 IPR018082 -
Lja5g0234 503 Gene3D - 72 414 IPR012334 -
Lja5g0234 503 SMART amb_all 147 344 IPR002022 -
Lja5g0234 503 PANTHER PECTATE LYASE 6 434 - -
Lja5g0234 503 SUPERFAMILY Pectin lyase-like 64 388 IPR011050 -
Lja5g0234 503 Pfam Pectate lyase 154 336 IPR002022 -
Lja5g0234 503 PANTHER PECTATE LYASE 18-RELATED 6 434 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0234 Lja-Chr5 2075713 2081544 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0234 1 487 Polysaccharide Lyase AT3G53190 61.066 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0234 K01728 - gmx:100808438 806.208