Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0233 ATGAACAACGTTGGAGATGAAAGTCAAAAGAAGAGAAAATCTCCAAGCTCTGAGGCCTCTACCTCGAGGACTTCGCGGAGAAGATTATGCAGCAACAAAAATGAAGGAGTCTCCACCACACTGAGGCTTTATGATGACCCTTGGAAAATCAAGAAGATGTTAACCGCCAGCGATTTAGGAATCTTGAGCAGGCTCTTGTTGTCTGCAGATTTGGTGACGAAGCAGATATTGCCTGTGTTGGGTGCTGATCAAGCAAGAGCTACAGATACTGAAGAAGGTTCCCAAGTTAAAATTTGGGACATGGACACAAAATCTATGCATCAACTTGTTCTTAAGCGATGGTCCTCTTCCAAGAGCTATGTTCTTATTGGAAAGTGGAACCAAGATTTTGTGAGAAGAAGAGAGCTGAAGAAAGGGGATGAGGTTGGATTTCAGTGGAACCCTTATTACTATGCTTTCAATTTTTGCGTTCTTAAACGGGCAATGCTGCCAAATTAA 498 0.4257 MNNVGDESQKKRKSPSSEASTSRTSRRRLCSNKNEGVSTTLRLYDDPWKIKKMLTASDLGILSRLLLSADLVTKQILPVLGADQARATDTEEGSQVKIWDMDTKSMHQLVLKRWSSSKSYVLIGKWNQDFVRRRELKKGDEVGFQWNPYYYAFNFCVLKRAMLPN* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0233 165 SUPERFAMILY DNA-binding pseudobarrel domain 46 150 IPR015300 -
Lja5g0233 165 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 8 160 - -
Lja5g0233 165 CDD B3_DNA 48 159 IPR003340 GO:0003677
Lja5g0233 165 MobiDBLite consensus disorder prediction 1 32 - -
Lja5g0233 165 Gene3D - 47 160 IPR015300 -
Lja5g0233 165 MobiDBLite consensus disorder prediction 1 17 - -
Lja5g0233 165 MobiDBLite consensus disorder prediction 18 32 - -
Lja5g0233 165 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 8 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0233 Lja-Chr5 2064290 2067722 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0233 50 144 RAV Transcription Factor Family AT1G50680 32.353 2.36e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0233 - - pvu:PHAVU_009G204600g 252.677