Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0232 ATGGGGAAGAAAACATTGAAGCTGCTACCTTCTATTTTCAGACCCAAGTTTATACCCTCTTGTGGCCACTCAAAGACCCTCTCCTTCCGATGTGGGACAACAGGGAATGATGAAATCTTCAAAACAGTTAACTCTGTTTTCTTCGACCCTGTTTCAGAGAGCGTGGTAGAAACTCCAAAATCATGGTTCACAACCTCCTCTGAATCCGCAAGCTTCTCAACAGAATCAGAGGATATCTTCTGCTACAATAATGATGAATCCCTTGACATGTTGGTTCGCGGCGCGAGGTCGGAGAGGCTGTTCTTCGAGCCCGGAGACACGAGCTCAATCCTGGAGAAGGCGAAGGCGAGCGGGTTTCCATTCAAGGAAAGCGTGGTGTTGGCCATGGAGTCAGATGATCCTTATGAAGATTTCAAGAGATCCATGGAGGAGATGGTGGAGTCTCATGGTGTGAAGGATTGGGAGAATTTGGAGGAGCTTTTGAGTTGGTATTTGAGGGTGAATGGTAAGAACAATCATGGTTTCATAGTTGGTGCTTTTGTGGATTTGCTTATTAGTATAGCAGCTTCTAACTCTAACTCTTGTTCTGATAATTCAACTTCTTATTCTTCTGCTGTTTCTTCTTTTGCTTCTTCACCATTATTGAGTCTATCTGAAGCCCAGAATGAGATTACTGAGCATGAGGCAGAAGATGATACTGTAACATCTAATTAG 714 0.4384 MGKKTLKLLPSIFRPKFIPSCGHSKTLSFRCGTTGNDEIFKTVNSVFFDPVSESVVETPKSWFTTSSESASFSTESEDIFCYNNDESLDMLVRGARSERLFFEPGDTSSILEKAKASGFPFKESVVLAMESDDPYEDFKRSMEEMVESHGVKDWENLEELLSWYLRVNGKNNHGFIVGAFVDLLISIAASNSNSCSDNSTSYSSAVSSFASSPLLSLSEAQNEITEHEAEDDTVTSN* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0232 237 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 6 214 IPR038933 GO:0045892
Lja5g0232 237 PANTHER TRANSCRIPTION REPRESSOR OFP13 6 214 - -
Lja5g0232 237 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 125 187 IPR006458 -
Lja5g0232 237 Coils Coil 217 237 - -
Lja5g0232 237 ProSiteProfiles OVATE domain profile. 127 186 IPR006458 -
Lja5g0232 237 Pfam Transcriptional repressor, ovate 131 187 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0232 Lja-Chr5 2056007 2056720 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lja5g0232 Ovate 4.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0232 - - gmx:100527123 300.441