LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja5g0230	ATGGCTTCCGAAACCGTGATAAGCCCTGAAACAGTATCAAAAGCCGTCGCCTCCCTCCTCAAATGGCGAAAATCCCAATCGGAGACGCAAAAACCCAACCTCTTAGGCCTAGACGAGGAGTTCGTGTACCTCGTCCTCACCCTGAAGAAGGTCCCTCAAAAGGGTCGCGTTAACCCTCACAAGCTTCCCCTCCCTCACTCTCTCCACTCCGATTTCTCCCAGCACTGCCTCATCCTCGACGACCGCGCCAACAAGGGCCGTGTCACCAAGGCGGACGCGCAGGCCAAGATCAAGGCTGAGTCCATCCCCATTGCCAAGGTCCTCAAGCTCTCCAAGCTCACTTCTGATTACCGCCCCTTTGAGGCCAAGCGGAAGCTCTGTGACTCCTATGATCTTTTCTTCACGGACAAGGCGGTGGTTCCGTTGCTGGCCCGCCTTCTCGGGAAGCAGTTTTTCAAGAAGCGTAAGGTGCCTGTGCCGCTGGATTTGACTAAGAAGAATTGGAAGGAGCAGGTGGAGAAGGCGTGCTCATCGGCCATGATGTTTTTGAGGACCGGGACGTGTAGTGTGGTGAGGGTTGCCAAGGTGAGCATGGAGAAGGATGAGATTGTGGAGAATGTGGTTGCGGCTGTTCGTTCTGCGGTTGAGCTTGTTCCGAAGAAGTGGGGGAATGTGAGGTCGTTGCATGTTAAGATGTTGGATTCTCTGCCTTTGCCTATTTATCAGACTGTTCCTGATGTGAGGTTGAAGATTGATGGTGGTAAAGCTGAGGCGGAAGCGAAGGAGAAGGAGAGTGTGAAGGAGAAGAAGAAGGGTGAGGATGGGGATAAGGAAGTGGGGAAGAAGAATAAGAAGGGGAGGATTCATCAAGTTAAGTACATGGATGTGGATGCGGCCTTAGGGAGTAAGGATGAGGATGGTGACAATGCTGTCATAGGAGATGATGCTGAAAGGAGTGATGGAGGAGTGGAAAAATTGGAGAGTAAGAAGAGGGAGAAAGGAAGCAAAGTGGGGAAAGAGGCTGCTAAGTTGACTATTGTGAAAACATTGGGGGAACCTGAAACTCCTAAGGAAGGCGTCAAGCGGAGGAAAAATAAAGATGGGTCGTCTGCCAAAGTGACAAAGGAAGGTTTGGTCAAGAAGGGTGGAGATAAATTTCATGCTAAAAAGGAGGGGTCCAGTGAGAAGAAGAAGAAGAAGTTGAAGGGAGCTGATGTGAAGGAGATTTGCATAGCATGTTCAGTTTCAGTTTTCCATTTCTTGACTGCTAAGTTTAATGGAAAATCCATTCTGCTGTACGCACCAATTGTCAAACGTTTCAGGTTCATTTCTAGGAAATATGGGCAGCTTCGTGCAAGAACTGAAATTGCTCCTGATCAGAGGGAAAAATTTCTGCAGAAGTTCCAGCAAGTGCAGCAACAAGGGCCTAGTACCCTTCTTAACATGCCTTCTCTTGTTGGAGGAAATCATAAGCAGTTTTCAGCCCAGCAGCAAAATCCACTTCCACTTCTGCAGCAGTTTAGTACTCAAGGATCTTCTGTTTCTTCTCAATCTGGTATGGTACTTGGAGTCCAGTCCCCGAGTCTCAGTAGTATTTCTCCTGCCTCAATACAGCAGCCACCCAATTCTGCTCATTCCCCATCCAGTCAACAGCCATTGATTCCGGGTGTTGCTAAAGATGCAGATGTTGGCAATTCTAAGGTTGAGGAACAGCAGCAACATCAGAATTATGCTGATGAGTCAACAGCGGAATCTCCTTCTAGCAATGGGATTGGCAAGAATCTTGCAATTGAAGATGATTTGAAATCAGCATATGCTGTAGATTCACCTGCAGGAGTATCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGAGATATAGATTTGTCTCCCGGACAACCATTACAATCCAATCAACCTACTGGTAACCTTGGTGTCATTGGAAGAAGAAATGGTGCTGAACTTGGAGCCATTGGTGATAGTTTTAGTGGATCGAGTGTCAATTCTGGTGGAGTGCGTGATCAGCTATATAATTTACAAATGCTCGAGGCAGCACATCACAAAATTCCTCTAGCTAAAGACTCAGAACATCCTAGGACTTATACTCCTAGGCACCCAACAATTACACCTTCTAGCTATCCTCAAATACAGGCACCTATAGTTAATAATCCTGCCTTTTGGGAGAAAGTGGGACAGGAACCATTCGGCACTGACACCTTGTTCTTCGCATTTTATTATCAACAGAACACATACCAACAATATTTGGCTGCAAGGGAGCTAAAGAAGCAGTCTTGGAGATACCACCGAAAGTATCATACATGGTTTCAGCGACATGAAGAACCCAAAGTTGCTACCGATGAATTTGAGGAGGGAACATATGTCTACTTTGATTTTCATATTGCAAATGATGACCTGCAACATGGATGGTGTCAAAGAATCAAGACTGGATTCACTTTTGAGTATAATTATCTTGAAGATGAGCTTGTTGTATAG	2493	0.4653	MASETVISPETVSKAVASLLKWRKSQSETQKPNLLGLDEEFVYLVLTLKKVPQKGRVNPHKLPLPHSLHSDFSQHCLILDDRANKGRVTKADAQAKIKAESIPIAKVLKLSKLTSDYRPFEAKRKLCDSYDLFFTDKAVVPLLARLLGKQFFKKRKVPVPLDLTKKNWKEQVEKACSSAMMFLRTGTCSVVRVAKVSMEKDEIVENVVAAVRSAVELVPKKWGNVRSLHVKMLDSLPLPIYQTVPDVRLKIDGGKAEAEAKEKESVKEKKKGEDGDKEVGKKNKKGRIHQVKYMDVDAALGSKDEDGDNAVIGDDAERSDGGVEKLESKKREKGSKVGKEAAKLTIVKTLGEPETPKEGVKRRKNKDGSSAKVTKEGLVKKGGDKFHAKKEGSSEKKKKKLKGADVKEICIACSVSVFHFLTAKFNGKSILLYAPIVKRFRFISRKYGQLRARTEIAPDQREKFLQKFQQVQQQGPSTLLNMPSLVGGNHKQFSAQQQNPLPLLQQFSTQGSSVSSQSGMVLGVQSPSLSSISPASIQQPPNSAHSPSSQQPLIPGVAKDADVGNSKVEEQQQHQNYADESTAESPSSNGIGKNLAIEDDLKSAYAVDSPAGVSASLPESAQTSRDIDLSPGQPLQSNQPTGNLGVIGRRNGAELGAIGDSFSGSSVNSGGVRDQLYNLQMLEAAHHKIPLAKDSEHPRTYTPRHPTITPSSYPQIQAPIVNNPAFWEKVGQEPFGTDTLFFAFYYQQNTYQQYLAARELKKQSWRYHRKYHTWFQRHEEPKVATDEFEEGTYVYFDFHIANDDLQHGWCQRIKTGFTFEYNYLEDELVV*	831

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja5g0230	830	Gene3D	-	670	825	IPR038635	-
	Lja5g0230	830	PANTHER	CCR4 NOT-RELATED	450	830	IPR040168	GO:0030015
	Lja5g0230	830	MobiDBLite	consensus disorder prediction	568	592	-	-
	Lja5g0230	830	SUPERFAMILY	Ribosomal protein L1	14	241	IPR023674	-
	Lja5g0230	830	MobiDBLite	consensus disorder prediction	525	553	-	-
	Lja5g0230	830	Pfam	Ribosomal protein L1p/L10e family	19	235	IPR028364	-
	Lja5g0230	830	CDD	Ribosomal_L1	12	240	IPR028364	-
	Lja5g0230	830	PANTHER	BNAA10G16600D PROTEIN	450	830	-	-
	Lja5g0230	830	MobiDBLite	consensus disorder prediction	350	376	-	-
	Lja5g0230	830	MobiDBLite	consensus disorder prediction	255	338	-	-
	Lja5g0230	830	MobiDBLite	consensus disorder prediction	615	645	-	-
	Lja5g0230	830	MobiDBLite	consensus disorder prediction	525	593	-	-
	Lja5g0230	830	MobiDBLite	consensus disorder prediction	255	283	-	-
	Lja5g0230	830	Pfam	NOT2 / NOT3 / NOT5 family	687	824	IPR007282	GO:0006355
	Lja5g0230	830	MobiDBLite	consensus disorder prediction	298	338	-	-
	Lja5g0230	830	MobiDBLite	consensus disorder prediction	354	376	-	-
	Lja5g0230	830	MobiDBLite	consensus disorder prediction	695	714	-	-
	Lja5g0230	830	Gene3D	-	87	178	IPR016095	-
	Lja5g0230	830	MobiDBLite	consensus disorder prediction	613	648	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja5g0230	Lja-Chr5	2001139	2008501	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja5g0230	129	231	Cytoplasmic Ribosomal Protein Gene Family	AT2G27530	31.068	3.00e-07	50.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja5g0230	K12580		-	gmx:100785965	619.002