LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja5g0226	ATGTTTCACGAGAGCACTGCTGCGATCGCCGCCACGGCGCGGTGGCCGACTCACCACCAACCGAGTCAGTGGACTCGCTACCATGACAAGCTCTTTGAACGAGCTCTGCTAGCTGTGCCGGAGGATTTACCGGACCGCTGGGAGAAGATCGCTGAGCAGGTGCCTGGGAAGTCGGCGGCGGAGGTCAGGGAGCACTACGAAGCTTTGGTTCATGACGTGTTTGAGATCGATTCGGGGCGCGTTGAGGTGCCGAGTTATGCTGATGACTCGGTGGCGGATGGCGGCGGAGATGGGTGGGATTCTTCGAACCAGATCTCTTTTGGGTCGAAGTCGAAACATGGTGGTGATAACGAGAGGAAGAAAGGGACACCGTGGACTGAAGAGGAACACAGGCTGTTCCTTGTTGGGCTAAGCAAGTTTGGCAAAGGAGATTGGAGAAGCATTTCAAGGAATGTTGTTGTGACAAGAACACCGACTCAAGTAGCTAGCCATGCCCAGAAGTACTTCCTTCGCCAGAATTCGGTGAAAAAAGAGAGGAAAAGGTCAAGTATCCATGACATAACCACGGTGGACAGTAACTCTGTGCCTGCGCCAATTGATCAGAATTGGGTTCCTCCTCCAGGTGGTTCAATGCAGCAACACTCACAAGAAATGCAGCAATACCCGTCGAACAATTTGCATGATCAAATGGGTAGATTTGGGTATTCAAACTTTGGTTTTTAA	723	0.5173	MFHESTAAIAATARWPTHHQPSQWTRYHDKLFERALLAVPEDLPDRWEKIAEQVPGKSAAEVREHYEALVHDVFEIDSGRVEVPSYADDSVADGGGDGWDSSNQISFGSKSKHGGDNERKKGTPWTEEEHRLFLVGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDSNSVPAPIDQNWVPPPGGSMQQHSQEMQQYPSNNLHDQMGRFGYSNFGF*	241

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja5g0226	240	MobiDBLite	consensus disorder prediction	97	111	-	-
	Lja5g0226	240	Gene3D	-	17	83	-	-
	Lja5g0226	240	CDD	SANT	124	169	IPR001005	-
	Lja5g0226	240	MobiDBLite	consensus disorder prediction	85	124	-	-
	Lja5g0226	240	SMART	sant	20	72	IPR001005	-
	Lja5g0226	240	SMART	sant	121	171	IPR001005	-
	Lja5g0226	240	CDD	SANT	24	70	IPR001005	-
	Lja5g0226	240	SUPERFAMILY	Homeodomain-like	119	174	IPR009057	-
	Lja5g0226	240	ProSiteProfiles	SANT domain profile.	120	173	IPR017884	-
	Lja5g0226	240	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	120	172	IPR006447	GO:0003677
	Lja5g0226	240	SUPERFAMILY	Homeodomain-like	22	78	IPR009057	-
	Lja5g0226	240	PANTHER	SYRINGOLIDE-INDUCED PROTEIN 1-3-1B	19	240	-	-
	Lja5g0226	240	PANTHER	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	19	240	IPR043363	-
	Lja5g0226	240	Pfam	Myb-like DNA-binding domain	124	169	IPR001005	-
	Lja5g0226	240	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	117	173	IPR017930	-
	Lja5g0226	240	ProSiteProfiles	Myb-like domain profile.	16	70	IPR001005	-
	Lja5g0226	240	ProSiteProfiles	Myb-like domain profile.	117	169	IPR001005	-
	Lja5g0226	240	Gene3D	-	123	175	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja5g0226	Lja-Chr5	1963705	1965578	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lja5g0226		Myb_DNA-binding	8.4e-12	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja5g0226	-		-	gmx:547481	386.726