Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0226 ATGTTTCACGAGAGCACTGCTGCGATCGCCGCCACGGCGCGGTGGCCGACTCACCACCAACCGAGTCAGTGGACTCGCTACCATGACAAGCTCTTTGAACGAGCTCTGCTAGCTGTGCCGGAGGATTTACCGGACCGCTGGGAGAAGATCGCTGAGCAGGTGCCTGGGAAGTCGGCGGCGGAGGTCAGGGAGCACTACGAAGCTTTGGTTCATGACGTGTTTGAGATCGATTCGGGGCGCGTTGAGGTGCCGAGTTATGCTGATGACTCGGTGGCGGATGGCGGCGGAGATGGGTGGGATTCTTCGAACCAGATCTCTTTTGGGTCGAAGTCGAAACATGGTGGTGATAACGAGAGGAAGAAAGGGACACCGTGGACTGAAGAGGAACACAGGCTGTTCCTTGTTGGGCTAAGCAAGTTTGGCAAAGGAGATTGGAGAAGCATTTCAAGGAATGTTGTTGTGACAAGAACACCGACTCAAGTAGCTAGCCATGCCCAGAAGTACTTCCTTCGCCAGAATTCGGTGAAAAAAGAGAGGAAAAGGTCAAGTATCCATGACATAACCACGGTGGACAGTAACTCTGTGCCTGCGCCAATTGATCAGAATTGGGTTCCTCCTCCAGGTGGTTCAATGCAGCAACACTCACAAGAAATGCAGCAATACCCGTCGAACAATTTGCATGATCAAATGGGTAGATTTGGGTATTCAAACTTTGGTTTTTAA 723 0.5173 MFHESTAAIAATARWPTHHQPSQWTRYHDKLFERALLAVPEDLPDRWEKIAEQVPGKSAAEVREHYEALVHDVFEIDSGRVEVPSYADDSVADGGGDGWDSSNQISFGSKSKHGGDNERKKGTPWTEEEHRLFLVGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDSNSVPAPIDQNWVPPPGGSMQQHSQEMQQYPSNNLHDQMGRFGYSNFGF* 241
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0226 240 MobiDBLite consensus disorder prediction 97 111 - -
Lja5g0226 240 Gene3D - 17 83 - -
Lja5g0226 240 CDD SANT 124 169 IPR001005 -
Lja5g0226 240 MobiDBLite consensus disorder prediction 85 124 - -
Lja5g0226 240 SMART sant 20 72 IPR001005 -
Lja5g0226 240 SMART sant 121 171 IPR001005 -
Lja5g0226 240 CDD SANT 24 70 IPR001005 -
Lja5g0226 240 SUPERFAMILY Homeodomain-like 119 174 IPR009057 -
Lja5g0226 240 ProSiteProfiles SANT domain profile. 120 173 IPR017884 -
Lja5g0226 240 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 120 172 IPR006447 GO:0003677
Lja5g0226 240 SUPERFAMILY Homeodomain-like 22 78 IPR009057 -
Lja5g0226 240 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 19 240 - -
Lja5g0226 240 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 19 240 IPR043363 -
Lja5g0226 240 Pfam Myb-like DNA-binding domain 124 169 IPR001005 -
Lja5g0226 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 173 IPR017930 -
Lja5g0226 240 ProSiteProfiles Myb-like domain profile. 16 70 IPR001005 -
Lja5g0226 240 ProSiteProfiles Myb-like domain profile. 117 169 IPR001005 -
Lja5g0226 240 Gene3D - 123 175 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja5g0226 Lja-Chr5 1963705 1965578 Dispersed/Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja5g0226 Myb_DNA-binding 8.4e-12 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0226 - - gmx:547481 386.726