Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0219 ATGGGATCTGAAGCTCTTGTTCCGAAATGGGCATCGAAGCCTTGCATCATGGGAATCGACGAAGCTGGAAGAGGCCCTGTTCTAGGTCCCATGGTCTATGGTTGCTTGTACTGTGCTCGCTCCTACCAGAACACCCTTTCCACTTTGAGTTTTGCAGATTCTAAGACATTGAAAGAAGAGAAGAGGGAAGAATTATTTGAATCTTTAAAAGCCAATGATTCTATTGGATGGGCTGTTGATGTCATTGACCCCAAGGAGCTCTCTGCTAAGATGCTCAAGAAGAATAAGATAAACTTGAATGAGATATCACATGACTCTGCCATGGGCCTCGTCGATAGGGTGCTAAAAATGGGGGTGCTTCTAACTGAGGTTTATATAGACACAGTTGGAGATCCAGGGAAATATGAAGTGAAGCTGTCCAAAAATTTCCCATCTATCAAATTCGTGGTTGCAAAGAAGGCTGATAGTCTTTATCCTGTTGTCAGTGGTGCAAGCATAGTTGCAAAGGTCACGAGAGACCAAGCTATAAGACAATGGGTGCTTGAAGAGACTGCTGAAAACATGCACAGGAATTTTGGCTCTGGATATCCTGGAGATCCCACGACCAAGTCTTGGCTAGAACATCACAAAAATTCTGTCTTTGGATTTCCAACATTGGTCCGGTTTAGTTGGGGGACCTGCACCACTTATTTTAAAGATGGTGCTGAAGTCTTATGGGAGGCTGACAAAGATGAAGATGAAGGCGGCAATAATAATAGCCGCAAGCGACAACTGAAATTAAGCAATGTGGGTTTCACCACATCCAAGAGAAGTGAAGAAATAGAATCAAGTGGTAAAGGACGCTCTAGGTTTTTTCAGGCTCGGAAACTTGAGCACCTAAGTCATTTCTGA 891 0.4366 MGSEALVPKWASKPCIMGIDEAGRGPVLGPMVYGCLYCARSYQNTLSTLSFADSKTLKEEKREELFESLKANDSIGWAVDVIDPKELSAKMLKKNKINLNEISHDSAMGLVDRVLKMGVLLTEVYIDTVGDPGKYEVKLSKNFPSIKFVVAKKADSLYPVVSGASIVAKVTRDQAIRQWVLEETAENMHRNFGSGYPGDPTTKSWLEHHKNSVFGFPTLVRFSWGTCTTYFKDGAEVLWEADKDEDEGGNNNSRKRQLKLSNVGFTTSKRSEEIESSGKGRSRFFQARKLEHLSHF* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0219 296 SUPERFAMILY Ribonuclease H-like 15 232 IPR012337 -
Lja5g0219 296 Pfam Ribonuclease HII 17 227 IPR024567 GO:0004523
Lja5g0219 296 PANTHER RIBONUCLEASE 4 295 - -
Lja5g0219 296 PANTHER RIBONUCLEASE H2 SUBUNIT A 4 295 IPR001352 GO:0003723|GO:0004523
Lja5g0219 296 Gene3D - 3 186 IPR036397 GO:0003676
Lja5g0219 296 Gene3D Ribonuclease hii. Domain 2 187 236 IPR023160 GO:0004523
Lja5g0219 296 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 236 IPR024567 GO:0004523
Lja5g0219 296 MobiDBLite consensus disorder prediction 243 262 - -
Lja5g0219 296 TIGRFAM TIGR00729: ribonuclease HII 16 229 IPR004649 GO:0004523|GO:0016070
Lja5g0219 296 CDD RNase_HII_eukaryota_like 17 236 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0219 1 296 Core DNA Replication Machinery Family AT2G25100 68.350 1.74e-150 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0219 K10743 - gmx:100779875 515.383