Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0217 ATGAATGAACTGAGCAATACTTGTTTCCCGCCAAAGACCAAAATTCATTTACCAATTCCCGCTTTATTTCTTTTCCGCCTCTCTCACTCCCTCTCCTCAGTCCTCTCCTTCAATACAAATCACTCTGTAGCATTACCTGTTCCTCAAACACTCATTCACATTCATTCAAACCACGCAATCGCAAAGGGAAAACAACAAACTAAGATCATGGACACTTCAAACCCTGCTGCATTTGTGAATGCTGAGGCTCTTCCCAATTTTGTTGGAAAGAAAGTTCGAACTGTGGTTCAGGTGAATGGCACTGATGGTGAGGTTACCACCACAAAATCCACTGATGATTCTCAGCTAACCATAAAGGGGCTGCCACAAGTTCCTCTCATGAATTATATTGAGGTTATTGGTATTGCTGAAAGTAATGACTCTATTGCTGCTGAAATATGGACTGACTTTGGCAACACATTTGATACCAATGCTTACAATCAGCTATGCCAACTAGCAAATGGTGATTTCAAGAATCTGTTTCTCTAG 528 0.411 MNELSNTCFPPKTKIHLPIPALFLFRLSHSLSSVLSFNTNHSVALPVPQTLIHIHSNHAIAKGKQQTKIMDTSNPAAFVNAEALPNFVGKKVRTVVQVNGTDGEVTTTKSTDDSQLTIKGLPQVPLMNYIEVIGIAESNDSIAAEIWTDFGNTFDTNAYNQLCQLANGDFKNLFL* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0217 175 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 70 175 - -
Lja5g0217 175 PANTHER NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN 70 175 - -
Lja5g0217 175 SUPERFAMILY Nucleic acid-binding proteins 74 174 IPR012340 -
Lja5g0217 175 CDD RPA3 75 174 - -
Lja5g0217 175 Gene3D - 70 175 IPR012340 -
Lja5g0217 175 Pfam Replication factor A protein 3 70 168 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0217 Lja-Chr5 1909848 1911528 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0217 70 175 Core DNA Replication Machinery Family AT3G52630 58.879 4.97e-42 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0217 K10740 - gmx:100781484 179.104