Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0205 ATGTTTAACTCAATGAAGCTTGTTCTACCATTAATGCTCTTTTGTGCCCTTGCATTCATGGTCATCACTTCACTACCTCATCAGGAGGAGGCAGAAGCTCTGTTGAAGTGGAAAGCCAGCCTTGACAACCAAAGCCATGTCTTGCTCTCTTCATGGACAAGAAACAGTACTACTCCATGCAATTGGCTGGGAATTCGATGTGAGTACAAATCCATCTCCAAGCTGAATCTTACAAATGCTGGACTAAGAGGTACACTTCAAAGTCTCAACTTGTCATCACTTTCAAAACTCGACACCATAGTTTTAAGCAGCAATTCCTTGTATGGAGTTATACCTCACCACTTTGGGTTCATGTCCAACCTGCACACTCTTGATTTGTCCACTAACAAACTCTCCGGCACCATTCCCAATAGCATTGGTAATCTTTCCAAACTCTCTTACCTTGATCTCAGTTACAATGATCTCTCTGGGATTATTCCATATGAGATAACACAATTGGTTGGTCTTTACACATTGTCCATGAGTGATAATGTTTTCAGTGGGCCCCTTCCACGGGAAATAAGCAAACTAAGGAACCTGACCATGCTTCACGTACCTCACTCCAATCTTACAGGGACTATCCCAATCTCAATCCAAAAGCTAACCAACTTGTCACATTTAGATGTTGGAGGAAACAACCTCTATGGCAACATTCCTCACAGAATTTGGCAAATGGACCTAAAGCATTTGTCACTTGCAGTTAATAGCTTCAACGGTTCCATCCCTCAAGAAATTGTGAGGATGCGGAATCTCGAGAAGCTATATCTTCAAGAAAGTGGCCTTTCTGGTTCCATGCCACAAGAATCATGGCTGTCGAGGAACTTAATAGAGATTGATATGAGCAGTTGCAATCTCACTGGCTCTATCCCTATTTCAATAGGAATGTTGGCCAATATATCACTTCTCAAGTTACAGAACAACCAGTTAACTGGTCACATTCCTAGAGAAATAGGAAAGTTGGTAAATCTCAGGTACTTATATTTTGGAGATAATAGTCTTTCTGGGTCCATTCCTCAAGAAATTGGATTTCTTAATCAAGTTGGTGAGTTTGATTTGTCACTGAATTATCTCACTGGTACAATTCCCTCTACAATTGGAAACATGAGTCATTTATATTATCTTTACCTTTATTCCAACAATCTCACTGGTAGAATTCCTGATGAAGTTGGAAAACTCTCTTTTATTGCAATCCAATTGGTAGCAAACAACCTTTCCGGGCCGATTCCAGCTTCCTTAGGTAACTCTGTCAATATAGAATCTGTTGTTCTTGGTGAAAATAAATTTTCTGGCCCAATTCCTTCCACCATTGGAAACTGGACAAAGATCAAAGTATTGATGTTAATGCTGAATTCACTTACCGGCAACCTTCCAATAGAGATGAACAATCTTACCAATTTGGAAAATTTGCAATTAGCTGACAATAATTTCCCTGGTCATTTACCTGACAACATTTGTCTCGGTGGAAAGTTGGAAAAATTATCTGCTAGCAATAACCAATTCATAGGCCCAATTCCAAGGAGTATGAAGAATTGCTCTAGCCTTATAAGAGTGCGGCTTCAACAAAACCAATTGACTGGAAACATAACAAATGCTTTTGGTGTATATCCAAATTTGGTCTACATCGAATTGAGTGAAAACAAATTTTATGGCCCCCTTTCACCAAATTGGGGAAAGTGCAATAACCTCACAGCCCTTAAAGTCTCCAACAATGATTTATCCGGTGGTATACCACCAAAGCTTGGCGAGGCATCAAATTTACATGTACTAGACTTGTCCTCAAACCATTTGACAGGAAAAATCCCAAAGGACCTAGGCAACTTGAAGTCTTTGTTAAAACTCTTGATAAGTGATAATCATCTTTTAGGAAATATTCCTACGCAGCTGACATCATTGCATGACCTTGATACCTTGGAGGTTGCAGCAAATAATTTGAGCGGCTTCATCCCAACACAACTTGGAAGGTTGTCTAAACTATTGAATTTGAATTTGAGTCACAATAAGTTTGAAGGAAGTATTCCTATCGAATTTGGACAGTTAAATGTTCTTCAAAGTCTTGATCTTAGTGTGAATATTTTGGCTGGATCCATACCACCAATGCTTGCACAGTTGAAAATGTTAGAAATATTGAATCTGTCACGTAATAATCTTTCTGGAGTCATTCCTTCCAGTTTTGGTGAGATGTTAAGCTTAACAACGATTGATATATCATACAACCAATTGGAAGGCTCAATTCCAAACATTCCAGCCTTGCAGAAAGCTCCTTTTGATGCACTCAGAAACAACAAAGGCTTGTGTGGTAATGCCTCTGGCTTGGAGTTTTGCTCGACATCAGGTAGCAAATCTCATGATCATAAGAATAACAAAATCTTGTTAGTAGTTTTACCCCTTACTTTGGGCACTCTAGTACTAGCACTTTTTGTTTGCGGGGTCACATATTATCTCCGCCGCACTTCAAGCGCCAAAACAAATGAGCCTGCAGAATCACGACCACAAAATCTATTTTCAATATGGAGTTTTGATGGGAAAATGATGTATGAAAACATAATTGAAGCCACAAATGATTTTGACGACAAGCATCTCATTGGGGATGGAGTGCATGGACGTGTTTACAAAGCAGAATTGTCCACTGATCTAGTTGTGGCAGTGAAGAAACTTCATTCTTTGCCAAATGGAGAAATGTCTAATCAAAAAGCTTTTACAAGTGAGATTCAAGCTTTGACAGATATTCGACATCGCAACATTGTGAAGTTATATGGCTTTTGTTCACATTCACTACACTCATTTTTAGTTTATGAGTTCTTAGAGAATGGCAGTGTTGAGAAGATTCTGAACGATGATGGACAAGCAACTACATTTGGTTGGAATAGGAGGATGAATGTCATTAAGGATGTAGCTAATGCTTTATGCTATATGCATCATGATTGCTCACCTCCCATTGTTCATCGCGACATATCCAGCAAGAATGTTCTTTTGAATTCAGAATATGTGGCTCATGTCTCAGACTTTGGAACAGCTAAACTACTTGATCCTAATTCATCAAATTGGACCTCATTTGCAGGCACTTTCGGATATGCTGCTCCAGAACTAGCTTACACAATGGCAGTAAATGAGAAATGTGATGTGTATAGTTTTGGAGTATTAGCATTGGAAATTCTTTTTGGAAAGCACCCTGGTGATTTTATATCTTCACTCAATGTTGTGGGATCAACACTTGATGTCATGTCTTGGGTAAAAGAGTTGGACCTACGTCTCCCTCATCCATTAAATCATGTGTTTAAGGAGGTGGTATCATTGACAAGGATTGTTGTTACTTGCTTAATTGAAAGCCCACGCTCTCGCCCAACCATGGAGCAAATTTGTAAGGAGCTTGTAATGTCAAACTCATCTTCAATGGATCAAGCCCAATGA 3447 0.3919 MFNSMKLVLPLMLFCALAFMVITSLPHQEEAEALLKWKASLDNQSHVLLSSWTRNSTTPCNWLGIRCEYKSISKLNLTNAGLRGTLQSLNLSSLSKLDTIVLSSNSLYGVIPHHFGFMSNLHTLDLSTNKLSGTIPNSIGNLSKLSYLDLSYNDLSGIIPYEITQLVGLYTLSMSDNVFSGPLPREISKLRNLTMLHVPHSNLTGTIPISIQKLTNLSHLDVGGNNLYGNIPHRIWQMDLKHLSLAVNSFNGSIPQEIVRMRNLEKLYLQESGLSGSMPQESWLSRNLIEIDMSSCNLTGSIPISIGMLANISLLKLQNNQLTGHIPREIGKLVNLRYLYFGDNSLSGSIPQEIGFLNQVGEFDLSLNYLTGTIPSTIGNMSHLYYLYLYSNNLTGRIPDEVGKLSFIAIQLVANNLSGPIPASLGNSVNIESVVLGENKFSGPIPSTIGNWTKIKVLMLMLNSLTGNLPIEMNNLTNLENLQLADNNFPGHLPDNICLGGKLEKLSASNNQFIGPIPRSMKNCSSLIRVRLQQNQLTGNITNAFGVYPNLVYIELSENKFYGPLSPNWGKCNNLTALKVSNNDLSGGIPPKLGEASNLHVLDLSSNHLTGKIPKDLGNLKSLLKLLISDNHLLGNIPTQLTSLHDLDTLEVAANNLSGFIPTQLGRLSKLLNLNLSHNKFEGSIPIEFGQLNVLQSLDLSVNILAGSIPPMLAQLKMLEILNLSRNNLSGVIPSSFGEMLSLTTIDISYNQLEGSIPNIPALQKAPFDALRNNKGLCGNASGLEFCSTSGSKSHDHKNNKILLVVLPLTLGTLVLALFVCGVTYYLRRTSSAKTNEPAESRPQNLFSIWSFDGKMMYENIIEATNDFDDKHLIGDGVHGRVYKAELSTDLVVAVKKLHSLPNGEMSNQKAFTSEIQALTDIRHRNIVKLYGFCSHSLHSFLVYEFLENGSVEKILNDDGQATTFGWNRRMNVIKDVANALCYMHHDCSPPIVHRDISSKNVLLNSEYVAHVSDFGTAKLLDPNSSNWTSFAGTFGYAAPELAYTMAVNEKCDVYSFGVLALEILFGKHPGDFISSLNVVGSTLDVMSWVKELDLRLPHPLNHVFKEVVSLTRIVVTCLIESPRSRPTMEQICKELVMSNSSSMDQAQ* 1149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0205 1148 PRINTS Leucine-rich repeat signature 145 158 - -
Lja5g0205 1148 PRINTS Leucine-rich repeat signature 716 729 - -
Lja5g0205 1148 SUPERFAMILY L domain-like 67 352 - -
Lja5g0205 1148 Gene3D Phosphorylase Kinase; domain 1 829 946 - -
Lja5g0205 1148 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 287 388 - -
Lja5g0205 1148 ProSiteProfiles Protein kinase domain profile. 868 1138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0205 1148 SMART LRR_typ_2 476 500 IPR003591 -
Lja5g0205 1148 SMART LRR_typ_2 716 739 IPR003591 -
Lja5g0205 1148 SMART LRR_typ_2 118 141 IPR003591 -
Lja5g0205 1148 SMART LRR_typ_2 381 405 IPR003591 -
Lja5g0205 1148 SMART LRR_typ_2 597 620 IPR003591 -
Lja5g0205 1148 SMART LRR_typ_2 333 357 IPR003591 -
Lja5g0205 1148 SMART LRR_typ_2 142 165 IPR003591 -
Lja5g0205 1148 SMART LRR_typ_2 668 692 IPR003591 -
Lja5g0205 1148 SMART LRR_typ_2 214 238 IPR003591 -
Lja5g0205 1148 ProSitePatterns Tyrosine protein kinases specific active-site signature. 992 1004 IPR008266 GO:0004672|GO:0006468
Lja5g0205 1148 ProSiteProfiles Leucine-rich repeat profile. 742 764 IPR001611 GO:0005515
Lja5g0205 1148 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Lja5g0205 1148 ProSitePatterns Protein kinases ATP-binding region signature. 874 897 IPR017441 GO:0005524
Lja5g0205 1148 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 287 388 - -
Lja5g0205 1148 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 201 344 - -
Lja5g0205 1148 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 383 1142 - -
Lja5g0205 1148 Pfam Leucine rich repeat 647 703 IPR001611 GO:0005515
Lja5g0205 1148 Pfam Leucine rich repeat 96 155 IPR001611 GO:0005515
Lja5g0205 1148 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 201 344 - -
Lja5g0205 1148 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 383 1142 - -
Lja5g0205 1148 SUPERFAMILY L domain-like 411 490 - -
Lja5g0205 1148 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 123 234 - -
Lja5g0205 1148 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 150 281 - -
Lja5g0205 1148 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 7 169 - -
Lja5g0205 1148 Pfam Leucine Rich Repeat 719 738 IPR001611 GO:0005515
Lja5g0205 1148 Pfam Leucine Rich Repeat 598 620 IPR001611 GO:0005515
Lja5g0205 1148 Gene3D Transferase(Phosphotransferase) domain 1 947 1148 - -
Lja5g0205 1148 Gene3D Ribonuclease Inhibitor 409 475 IPR032675 -
Lja5g0205 1148 Gene3D Ribonuclease Inhibitor 478 789 IPR032675 -
Lja5g0205 1148 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 7 169 - -
Lja5g0205 1148 ProSiteProfiles Leucine-rich repeat profile. 598 621 IPR001611 GO:0005515
Lja5g0205 1148 Pfam Protein kinase domain 869 1135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0205 1148 SUPERFAMILY Protein kinase-like (PK-like) 847 1137 IPR011009 -
Lja5g0205 1148 SUPERFAMILY RNI-like 315 759 - -
Lja5g0205 1148 Gene3D Ribonuclease Inhibitor 27 183 IPR032675 -
Lja5g0205 1148 Gene3D Ribonuclease Inhibitor 184 284 IPR032675 -
Lja5g0205 1148 Gene3D Ribonuclease Inhibitor 285 408 IPR032675 -
Lja5g0205 1148 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 123 234 - -
Lja5g0205 1148 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 150 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0205 Lja-Chr5 1839424 1843274 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0205 7 662 Receptor kinase-like Gene Family AT4G08850 33.737 3.44e-92 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja5g0205 Pkinase 8.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0205 - - gmx:100808316 1301.96