Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0204 ATGTTTCACATGAAGAAGCTTGGGGTTGTTGTCATGCTCTTTGCATTAATGGTCATTTCATTACCGTATGCTGCAGGTAACCGGGAGGTAGATGCTCTGTTGAGGTGGGAAACCAGCCTTGACAACCAAAGCCATGCTTTGCTCTCTTCATGGACAAGTAACAGTACTAGTCCATGCAATTGGCTGGGAATTGAATGTGATTCCAAATCCATCTCCATGATGAATCTTACAAATGTTGGACTCAAAGGTACACTTCAAAGTCTCAACTTGTCATCACTTCCAAAACTCCACACCATAGATTTAAGCAGCAATTCCTTGTATGGAGTTATACCTCTCCACTTTGGGTTCATGTCCAACCTGAACACTCTTGATTTGTCAATGAATTATCTCTCTGGTACAATTCCCTCTACAATTGGAAACATGAGCAATTTATACTATCTTTACCTTCATACCAACTATCTCACCCGTAACTCGATCAATATGGATATTGTTTGCCTTAGTCAAAATAAACTCTCCGGACCAATTCCTTCCACCATCGGAAACTGGACAAAGGTTAGAAAATTATCTTTCCACTTAAATGCACTTAGTGGGAACCTTCCAATAGAGATGAACAAGCTTACCAATTTGGAAATTGTGCAATTAGATTACAATAATTTCATTGGCCATTTACCTGACAACATTTGTGTTGGTGGAAAGTTGGAAAAATTAACGGCTAGCAATAACCAGTTCACAGGCCCAATTCCAAGGAGTTTGAAGAATTGCTCTAGCCTTATAAGAGTTAGGCTTCAAAAAAACCAATTGACTGAAAATATAACATATGCTTTTGGTGTATATCCAAATTTGGACTACATCGAATTGAGTGAAAACAATTTTTATAAGCTAGGTGAGGCAACAAATTTAGAGGTGCTTAACTTGTCCTCAAACCATATGACAGGAAAAATCCCAAAGGAACTAGGCAACCTGAAGTCATTGATCCAACTCTCAATAAGTTATAATCATCTTTCAGGAAATATTCCCGAGCAACTGGCATCATTGCAGGAACTTAATACTTTGGAGGTTGCAACAAATAATTTGATTTCCTTCATACCAGCACAACTTGGAAGGTTGCCTAAGCTATTGCATTTGAGTTTGAGTCAAAATAAGTTGGAGGGAAGTATTCCTGTTGAGTTTGCACAGTTGAAAATGTTAGAAATATTGAATCTATCACATAATAATCTTTCTAAAGTCATTCCCTCAAATTTTAATGAGATGCTAAGCTTGACAACTATTGATATATCGTACAACCAATTAGAAGGCTCAGTTCCAAACACTATAGCCTTCCAAAAAGCTCCTCCCGATGCCTTCAGAAATAACAAAGGCTTGTGTGGCAATGCCTCTGGCTTGGAGTCTTGCTCAATTTTAAGTGGCAAATTTCATGATCATAAGAATAACAAAATCTTGTTGGCAGTCTTACCCCTTACTTTGGGCACTCTAATACTAGTACTTTGTGTTTGTGGGGTCACATATTTTCTCCGCCACACTTCAAGCGCCAAAAAAGACGAGCCTGCCGAATCACAACCACAAAATCTATTTGCAATATGGAGTTTTGATGGGAAAATGGTGTATGAGAACATTATTGAAGCCACAGAAGATTTTCACAGCAAACATCTCATTGGGAATGGAGTACATGGATCTGTTTACAGAGCAGAATTATCCTCTGGTCTAGTTGTGGCTGTGAAGAAACTTCATTCTTTACCAGATGAAGACATGTCTAATCTAAAAGCTTTTGCAAGTGAGATCCAAGCTTTGACAAAAATCCGACATCGTAACATTGTGAAGTTATATGGGTTTTGTTCACATTCACTACACTCATTTATAGTTTATGAGTTCTTAGAGAAGAATAGTGTTGAGAAGATTCTGAAAGATGATGAACATGCAACTGCATTTGATTGGAATAGGAGGACGAGTGTCATTAAGGCTGTAGCTAATGCTCTATGCTATATGCATCATGATTGCTCACCTCCAATTGTTCATCGCGACATATCCAGCAAGAATGTTCTATTGGATTTAGATTATGTGGCCCATGTCTCAGACTTTGGAACAGCTAAACTTCTTAATCCTAATTCATCAAATTGTACCTCATTTGCAGGCACCTTTGGATATGTTGCTCCAGAACTGGCTTATACAATGGAAGTGAATGAAAAATGCGATGTGTATAGTTTTGGAGTATTTGCATTGGAAGTACTTTTTGGAAAGCACCCCGGAGATTTTGTATCTTCATTGAGTGGTGCAAGCTCAACACTTGATGTTATGCGTTTGATAGATAAGTTGGACTTCCGTCTCCCTCATCCTATAAATCCTGTTGTCAAGAAGGTGATAACAATAATAAGAATAGCTGTTGCTAGCTTAACGGAATGCCCACGCTCACGCCCGACCATGGTGCAGGTTTGCAAGGAGCTTGTAATGTCAAACGCATCTTCAATGGATTAG 2469 0.386 MFHMKKLGVVVMLFALMVISLPYAAGNREVDALLRWETSLDNQSHALLSSWTSNSTSPCNWLGIECDSKSISMMNLTNVGLKGTLQSLNLSSLPKLHTIDLSSNSLYGVIPLHFGFMSNLNTLDLSMNYLSGTIPSTIGNMSNLYYLYLHTNYLTRNSINMDIVCLSQNKLSGPIPSTIGNWTKVRKLSFHLNALSGNLPIEMNKLTNLEIVQLDYNNFIGHLPDNICVGGKLEKLTASNNQFTGPIPRSLKNCSSLIRVRLQKNQLTENITYAFGVYPNLDYIELSENNFYKLGEATNLEVLNLSSNHMTGKIPKELGNLKSLIQLSISYNHLSGNIPEQLASLQELNTLEVATNNLISFIPAQLGRLPKLLHLSLSQNKLEGSIPVEFAQLKMLEILNLSHNNLSKVIPSNFNEMLSLTTIDISYNQLEGSVPNTIAFQKAPPDAFRNNKGLCGNASGLESCSILSGKFHDHKNNKILLAVLPLTLGTLILVLCVCGVTYFLRHTSSAKKDEPAESQPQNLFAIWSFDGKMVYENIIEATEDFHSKHLIGNGVHGSVYRAELSSGLVVAVKKLHSLPDEDMSNLKAFASEIQALTKIRHRNIVKLYGFCSHSLHSFIVYEFLEKNSVEKILKDDEHATAFDWNRRTSVIKAVANALCYMHHDCSPPIVHRDISSKNVLLDLDYVAHVSDFGTAKLLNPNSSNCTSFAGTFGYVAPELAYTMEVNEKCDVYSFGVFALEVLFGKHPGDFVSSLSGASSTLDVMRLIDKLDFRLPHPINPVVKKVITIIRIAVASLTECPRSRPTMVQVCKELVMSNASSMD* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0204 822 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 10 164 - -
Lja5g0204 822 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 294 399 - -
Lja5g0204 822 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 382 819 - -
Lja5g0204 822 ProSitePatterns Tyrosine protein kinases specific active-site signature. 669 681 IPR008266 GO:0004672|GO:0006468
Lja5g0204 822 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 10 164 - -
Lja5g0204 822 Gene3D Transferase(Phosphotransferase) domain 1 624 821 - -
Lja5g0204 822 SUPERFAMILY Protein kinase-like (PK-like) 527 814 IPR011009 -
Lja5g0204 822 ProSiteProfiles Protein kinase domain profile. 545 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0204 822 Gene3D Ribonuclease Inhibitor 294 340 IPR032675 -
Lja5g0204 822 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 382 819 - -
Lja5g0204 822 Pfam Leucine rich repeat 347 406 IPR001611 GO:0005515
Lja5g0204 822 Pfam Leucine rich repeat 94 154 IPR001611 GO:0005515
Lja5g0204 822 Gene3D Ribonuclease Inhibitor 26 159 IPR032675 -
Lja5g0204 822 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 160 292 - -
Lja5g0204 822 Pfam Protein kinase domain 545 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0204 822 PRINTS Leucine-rich repeat signature 120 133 - -
Lja5g0204 822 PRINTS Leucine-rich repeat signature 393 406 - -
Lja5g0204 822 Gene3D Phosphorylase Kinase; domain 1 506 623 - -
Lja5g0204 822 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Lja5g0204 822 ProSiteProfiles Leucine-rich repeat profile. 395 416 IPR001611 GO:0005515
Lja5g0204 822 Gene3D Ribonuclease Inhibitor 160 293 IPR032675 -
Lja5g0204 822 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 294 399 - -
Lja5g0204 822 Pfam Leucine Rich Repeat 299 321 IPR001611 GO:0005515
Lja5g0204 822 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 160 292 - -
Lja5g0204 822 SUPERFAMILY RNI-like 75 438 - -
Lja5g0204 822 SMART LRR_typ_2 369 392 IPR003591 -
Lja5g0204 822 SMART LRR_typ_2 393 416 IPR003591 -
Lja5g0204 822 SMART LRR_typ_2 117 141 IPR003591 -
Lja5g0204 822 SMART LRR_typ_2 321 345 IPR003591 -
Lja5g0204 822 SMART LRR_typ_2 417 450 IPR003591 -
Lja5g0204 822 SMART LRR_typ_2 206 230 IPR003591 -
Lja5g0204 822 SMART LRR_typ_2 93 116 IPR003591 -
Lja5g0204 822 Gene3D Ribonuclease Inhibitor 341 465 IPR032675 -
Lja5g0204 822 ProSitePatterns Protein kinases ATP-binding region signature. 551 574 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0204 Lja-Chr5 1834790 1837577 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0204 81 717 Receptor kinase-like Gene Family AT4G08850 41.816 2.48e-179 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja5g0204 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0204 - - mtr:MTR_0365s0020 966.452