Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0202 ATGGCAGCATCGTCTTCCTCAGCATCACTCTTTGGATTCAGAGAAGAGGATAATCAGATGAACCAACAGCAGCAACATTCCCTGGTGGCAGCAGCACCATCCTCTTCAGCAACTCCATCTGCACCACCACCCCAGAAGAAAAAAAGAAACCAACCTGGAACACCAAATCCAGATGCAGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTCATATGTGAGGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAACTTGCAACTCCACAGAAGAGGACACAACTTGCCTTGGAAGCTTAAGCAGAAGACAAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGCCCTGAGCCCACATGCGTCCACCATGACCCTTCAAGGGCTCTGGGCGACCTCACAGGGATCAAGAAGCATTACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAGACTTGTGGCACCAGGGAATACAGATGTGACTGTGGCACTCTCTTCTCCAGGAGAGACAGTTTCATCACCCACAGGGCCTTCTGTGATGCATTGGCACAAGAGAGTGCAAGACAACCTCCAAACCTGAGCAGTGCCATTGGCAGCCATCTATATGGGAGCAGCAGCAACAATATGGGGTTAGCCTTATCCCATGTGGGACCTCAATTGTCCAACATGCAACCATCAGACCTAAACAACAACAACCAGTCAGCTGAGCTCTTGCGGCTCGGTGGCGCGGCCGGTCGGACCGGAGTGCAATTTGACCAAATGTTCCAAACAAGCCTTGGCCCAGCCTCCTTCAGACCTACACAGCAAAGCGTGGCCTCCTTCTTCTTGCCTCATGAGTCGAACCAGAACTACCACCATGATCAGCAGCAACAACAACAAGGGTTGGTGCAGCAAAACAAGTCGTTTCAAGGGCTAATTCAATTGTCTGAACTCAACAACCACCACCATCACAATCACAACAGCAATTCTCCATCAGGTGGTGCCAACAACAACAGCCTCTTCAACCTTCCATTCCTTTCAAGCAACAACAGCACCAACAGCAGCAACACCTCCTTCTCGGACCACTTCAATGAAAATGGTAGTGTCAACGACCAAGCCACCAATTTCTTCACCGGCAACGTGATGGGTGGCGGTGGCGGCGGCGGTAGTCATCAGCAGCACCACCAAACAACAGCAACAACCTCCGCTGCTCCTTCTCTGTTCAGCACATCCCTCCAAGCCAACAACAGTGCAATGGCTCACATGTCTGCAACTGCACTCCTTCAGAAAGCTGCTCAATTGGGTACAACTTCAAGCAACAGCACCGCTTCTCTGTTGAAAAGCTTTGGAAGCTCTTCCTCTAGCAGTGCACCCAAACCAATGGCTGGTGCTGCTGCAAACTATGGCGGCGTCGGCGTCGGTATGTTCAACGAGCAGAACAACCTGCAGGACTTGATGAACTCGTTTGCTGCGGCAAGTGGCGGCGGCGGCCATAACAATGTTTCCTCCATGTTTGAAACTGGGGGGTTTGAGGCTTATGATCGTGCAGGTGGTGTGAGTAGGGATCAGCAGAAGATGCAGGCGGCGATGAGCATTGGAGGGTCTGATAGGCTGAGTACTCGTGATTTTCTTGGTGTTGGTCAGATTGTGAGAAGCATGAGTGGTGGTGGACAAAGAGAACAGCAACATGCTTTTAATGCTTTGGAGGCAGAGAGAAATGCTGCTGCTGCTACAGCTGCGCCGTCAGGGCAATCTTTTGGAGGTGGTGGAGGGAATTTTCAGTGA 1824 0.5044 MAASSSSASLFGFREEDNQMNQQQQHSLVAAAPSSSATPSAPPPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNLSSAIGSHLYGSSSNNMGLALSHVGPQLSNMQPSDLNNNNQSAELLRLGGAAGRTGVQFDQMFQTSLGPASFRPTQQSVASFFLPHESNQNYHHDQQQQQQGLVQQNKSFQGLIQLSELNNHHHHNHNSNSPSGGANNNSLFNLPFLSSNNSTNSSNTSFSDHFNENGSVNDQATNFFTGNVMGGGGGGGSHQQHHQTTATTSAAPSLFSTSLQANNSAMAHMSATALLQKAAQLGTTSSNSTASLLKSFGSSSSSSAPKPMAGAAANYGGVGVGMFNEQNNLQDLMNSFAAASGGGGHNNVSSMFETGGFEAYDRAGGVSRDQQKMQAAMSIGGSDRLSTRDFLGVGQIVRSMSGGGQREQQHAFNALEAERNAAAATAAPSGQSFGGGGGNFQ* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0202 607 SMART c2h2final6 116 146 IPR013087 -
Lja5g0202 607 SMART c2h2final6 75 97 IPR013087 -
Lja5g0202 607 SMART c2h2final6 151 171 IPR013087 -
Lja5g0202 607 MobiDBLite consensus disorder prediction 588 607 - -
Lja5g0202 607 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Lja5g0202 607 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 575 - -
Lja5g0202 607 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Lja5g0202 607 MobiDBLite consensus disorder prediction 393 414 - -
Lja5g0202 607 MobiDBLite consensus disorder prediction 1 60 - -
Lja5g0202 607 MobiDBLite consensus disorder prediction 338 354 - -
Lja5g0202 607 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 575 - -
Lja5g0202 607 MobiDBLite consensus disorder prediction 334 354 - -
Lja5g0202 607 Gene3D Classic Zinc Finger 129 208 - -
Lja5g0202 607 SUPERFAMILY beta-beta-alpha zinc fingers 74 171 IPR036236 -
Lja5g0202 607 MobiDBLite consensus disorder prediction 1 36 - -
Lja5g0202 607 Gene3D Classic Zinc Finger 54 123 - -
Lja5g0202 607 Pfam Zinc-finger double-stranded RNA-binding 75 97 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0202 Lja-Chr5 1818425 1825284 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0202 45 570 IDZ Gene Family AT2G02070 48.940 4.68e-146 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja5g0202 zf-C2H2_jaz 3.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0202 K25870 - gmx:100786121 567.77